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LIST OF BINDING INTERFACES for query 'RNA POLYMERASE' in category 'PROTEIN NAME'

(Click on the 'Details' column to view details on interfaces and similar patterns of amino acids)
Click on the 'View' column to view patterns on the structural viewer)

PDB	Ligand	Drug	Indication	Macromolecule/ Organism	Pfam	Binding_Interfaces (View)	Details
2a68	RBT	Rifabutin (DB00615)	Rifabutin is an antibiotic used to treat mycobacterium avium complex disease in patients with HIV.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN; RNA POLYMERASE SIGMA FACTOR RPOD (Thermus thermophilus)	RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 Sigma70_r1_2 Sigma70_r2 Sigma70_r3 Sigma70_r4	2A68_C_RBTC8001
2a69	RPT	Rifapentine (DB01201)	Rifapentine is an antibiotic agent used in the treatment of pulmonary tuberculosis.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN; RNA POLYMERASE SIGMA FACTOR RPOD (Thermus thermophilus)	RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 Sigma70_r1_2 Sigma70_r2 Sigma70_r3 Sigma70_r4	2A69_C_RPTC8001
3nai	URF	Fluorouracil (DB00544)	Fluorouracil is a pyrimidine analog used to treat basal cell carcinomas, and as an injection in palliative cancer treatment.	RNA DEPENDENT RNA POLYMERASE (Murine norovirus 1)	RdRP_1	3NAI_A_URFA521
3sfu	RBV	Ribavirin (DB00811)	Ribavirin is a guanosine nucleoside used to treat some forms of Hepatitis C.	RNA POLYMERASE (Murine norovirus 1)	RdRP_1	3SFU_A_RBVA601
4oir	RFV	Rifamycin (DB11753)	Rifamycin is an antibacterial used to treat traveler's diarrhea.	DNA DIRECTED RNA POLYMERASE SIGMA FACTOR A; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA (Thermus thermophilus; synthetic construct)	RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 Sigma70_r1_2 Sigma70_r2 Sigma70_r3 Sigma70_r4	4OIR_C_RFVC1201
6bzo	FI8	Fidaxomicin (DB08874)	Fidaxomicin is a macrolide antibiotic used to treat diarrhea associated with Clostridium difficile infection.	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'; RNA POLYMERASE SIGMA FACTOR SIGA; RNA POLYMERASE-BINDING PROTEIN RBPA (Mycobacterium tuberculosis; synthetic construct)	RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RbpA Sigma70_r1_2 Sigma70_r2 Sigma70_r3 Sigma70_r4	6BZO_C_FI8C1201
6fbv	FI8	Fidaxomicin (DB08874)	Fidaxomicin is a macrolide antibiotic used to treat diarrhea associated with Clostridium difficile infection.	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA; DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'; RNA POLYMERASE SIGMA FACTOR SIGA (Mycobacterium tuberculosis (strain atcc 25618 / h37rv))	RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 Sigma70_r1_2 Sigma70_r2 Sigma70_r3 Sigma70_r4	6FBV_D_FI8D1904
PDB	Ligand	Drug	Indication	Macromolecule/ Organism	Pfam	Binding_Interfaces (View)	Details

[["2a68","RBT","Rifabutin (DB00615)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN;RNA POLYMERASE SIGMA FACTOR RPOD","RNA_pol_Rpb2_1;RNA_pol_Rpb2_2;RNA_pol_Rpb2_3;RNA_pol_Rpb2_45;RNA_pol_Rpb2_6;RNA_pol_Rpb2_7;Sigma70_r1_2;Sigma70_r2;Sigma70_r3;Sigma70_r4"],["2a69","RPT","Rifapentine (DB01201)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN;RNA POLYMERASE SIGMA FACTOR RPOD","RNA_pol_Rpb2_1;RNA_pol_Rpb2_2;RNA_pol_Rpb2_3;RNA_pol_Rpb2_45;RNA_pol_Rpb2_6;RNA_pol_Rpb2_7;Sigma70_r1_2;Sigma70_r2;Sigma70_r3;Sigma70_r4"],["3nai","URF","Fluorouracil (DB00544)","Murine norovirus 1","RNA DEPENDENT RNA POLYMERASE","RdRP_1"],["3sfu","RBV","Ribavirin (DB00811)","Murine norovirus 1","RNA POLYMERASE","RdRP_1"],["4oir","RFV","Rifamycin (DB11753)","Thermus thermophilus;synthetic construct","DNA DIRECTED RNA POLYMERASE SIGMA FACTOR A;DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA","RNA_pol_Rpb2_1;RNA_pol_Rpb2_2;RNA_pol_Rpb2_3;RNA_pol_Rpb2_45;RNA_pol_Rpb2_6;RNA_pol_Rpb2_7;Sigma70_r1_2;Sigma70_r2;Sigma70_r3;Sigma70_r4"],["6bzo","FI8","Fidaxomicin (DB08874)","Mycobacterium tuberculosis;synthetic construct","DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA;DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA';RNA POLYMERASE SIGMA FACTOR SIGA;RNA POLYMERASE-BINDING PROTEIN RBPA","RNA_pol_Rpb1_1;RNA_pol_Rpb1_2;RNA_pol_Rpb1_3;RNA_pol_Rpb1_4;RNA_pol_Rpb1_5;RNA_pol_Rpb2_1;RNA_pol_Rpb2_2;RNA_pol_Rpb2_3;RNA_pol_Rpb2_45;RNA_pol_Rpb2_6;RNA_pol_Rpb2_7;RbpA;Sigma70_r1_2;Sigma70_r2;Sigma70_r3;Sigma70_r4"],["6fbv","FI8","Fidaxomicin (DB08874)","Mycobacterium tuberculosis (strain atcc 25618 \/ h37rv)","DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA;DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA';RNA POLYMERASE SIGMA FACTOR SIGA","RNA_pol_Rpb1_1;RNA_pol_Rpb1_2;RNA_pol_Rpb1_3;RNA_pol_Rpb1_4;RNA_pol_Rpb1_5;RNA_pol_Rpb2_1;RNA_pol_Rpb2_2;RNA_pol_Rpb2_3;RNA_pol_Rpb2_45;RNA_pol_Rpb2_6;RNA_pol_Rpb2_7;Sigma70_r1_2;Sigma70_r2;Sigma70_r3;Sigma70_r4"]]