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Each potential 3D motif is represented by a unique color.
The first jmol window shows motifs from the database that superpose with the query protein (motifs in query protein are coloured yellow).
The second jmol window shows the location of the potential motifs in the query protein.
In the second jmol window, in cases where the sites you chose consist of overlapping residues, only one colour is displayed for the overlapping region(s).




Location of potential motifs in the query protein.
In cases where the sites you chose consist of overlapping residues, only one colour is displayed for the overlapping region(s).