****************************** NASSAM v. R-2.0 ****************************** ****************************** SUMMARY OF HITS ****************************** Query:/var/www/html/nassam/VEC_D/1ffk.vek /var/www/html/nassam/PIK_D/ Hits can be viewed in RASMOL by using the select command supplied. HIT residues PATTERN information / RASMOL select command ============================ ============================ ---------------------------- makpa U G G A A : tm002-UGGAA T-loop tm002 [0 313 ] [0 314 ] [0 315 ] [0 316 ] [0 317 ] select 313 and :0, 314 and :0, 315 and :0, 316 and :0, 317 and :0 makp : tm002-UGGAA T-loop 30.00 % TTTTTF : 1 hits tm002 makpa U G C A A : tm003-UGCAA T-loop tm003 [0 481 ] [0 482 ] [0 483 ] [0 484 ] [0 485 ] select 481 and :0, 482 and :0, 483 and :0, 484 and :0, 485 and :0 makp : tm003-UGCAA T-loop 30.00 % TTTTTF : 1 hits tm003 makpa C G A A A : tm004-CGAAA T-loop tm004 [0 505 ] [0 506 ] [0 507 ] [0 508 ] [0 509 ] select 505 and :0, 506 and :0, 507 and :0, 508 and :0, 509 and :0 makp : tm004-CGAAA T-loop 30.00 % TTTTTF : 1 hits tm004 makpa U U U G A : tm005-UUUGA T-loop tm005 [0 624 ] [0 625 ] [0 626 ] [0 627 ] [0 628 ] select 624 and :0, 625 and :0, 626 and :0, 627 and :0, 628 and :0 makp : tm005-UUUGA T-loop 30.00 % TTTTTF : 1 hits tm005 makpa U G A G A : tm006-UGAGA T-loop tm006 [01388 ] [01389 ] [01390 ] [01391 ] [01392 ] select 1388 and :0,1389 and :0,1390 and :0,1391 and :0,1392 and :0 makp : tm006-UGAGA T-loop 30.00 % TTTTTF : 1 hits tm006 makpa U U A A A : tm007-UUAAA T-loop tm007 [02597 ] [02598 ] [02599 ] [02600 ] [02601 ] select 2597 and :0,2598 and :0,2599 and :0,2600 and :0,2601 and :0 makp : tm007-UUAAA T-loop 30.00 % TTTTTF : 1 hits tm007