****************************** NASSAM v. R-2.0 ****************************** ****************************** SUMMARY OF HITS ****************************** Query:/var/www/html/nassam/VEC_D/1ffk.vek /var/www/html/nassam/PIK_D/ Hits can be viewed in RASMOL by using the select command supplied. HIT residues PATTERN information / RASMOL select command ============================ ============================ ---------------------------- makpa G A A A : tl003-GAAA tetraloop tl003 [0 691 ] [0 692 ] [0 693 ] [0 694 ] select 691 and :0, 692 and :0, 693 and :0, 694 and :0 tl003 [0 805 ] [0 806 ] [0 807 ] [0 808 ] select 805 and :0, 806 and :0, 807 and :0, 808 and :0 tl003 [01629 ] [01630 ] [01631 ] [01632 ] select 1629 and :0,1630 and :0,1631 and :0,1632 and :0 tl003 [02412 ] [02413 ] [02414 ] [02415 ] select 2412 and :0,2413 and :0,2414 and :0,2415 and :0 makp : tl003-GAAA tetraloop 30.00 % TTTTTF : 4 hits tl003 makpa G C A A : tl004-GCAA tetraloop tl004 [01863 ] [01864 ] [01865 ] [01866 ] select 1863 and :0,1864 and :0,1865 and :0,1866 and :0 makp : tl004-GCAA tetraloop 30.00 % TTTTTF : 1 hits tl004 makpa G G G A : tl005-GGGA tetraloop tl005 [02249 ] [02250 ] [02251 ] [02252 ] select 2249 and :0,2250 and :0,2251 and :0,2252 and :0 makp : tl005-GGGA tetraloop 30.00 % TTTTTF : 1 hits tl005 makpa G A G A : tl006-GAGA tetraloop tl006 [02696 ] [02697 ] [02698 ] [02699 ] select 2696 and :0,2697 and :0,2698 and :0,2699 and :0 makp : tl006-GAGA tetraloop 30.00 % TTTTTF : 1 hits tl006 makpa G U A A : tl007-GUAA tetraloop tl007 [01055 ] [01056 ] [01057 ] [01058 ] select 1055 and :0,1056 and :0,1057 and :0,1058 and :0 tl007 [02877 ] [02878 ] [02879 ] [02880 ] select 2877 and :0,2878 and :0,2879 and :0,2880 and :0 makp : tl007-GUAA tetraloop 30.00 % TTTTTF : 2 hits tl007 makpa G C G A : tl008-GCGA tetraloop tl008 [0 577 ] [0 578 ] [0 579 ] [0 580 ] select 577 and :0, 578 and :0, 579 and :0, 580 and :0 makp : tl008-GCGA tetraloop 30.00 % TTTTTF : 1 hits tl008 makpa U U C G : tl012-UUCG tetraloop tl012 [01770 ] [01771 ] [01772 ] [01773 ] select 1770 and :0,1771 and :0,1772 and :0,1773 and :0 makp : tl012-UUCG tetraloop 30.00 % TTTTTF : 1 hits tl012 makpa G U G A : tl002-GUGA tetraloop tl002 [0 469 ] [0 470 ] [0 471 ] [0 472 ] select 469 and :0, 470 and :0, 471 and :0, 472 and :0 tl002 [02630 ] [02631 ] [02632 ] [02633 ] select 2630 and :0,2631 and :0,2632 and :0,2633 and :0 makp : tl002-GUGA tetraloop 30.00 % TTTTTF : 2 hits tl002