---------- J2SJMOL.JS
 // BH 3/2/2013 9:09:53 AM delete globals c$ and $fz
 // BH removed Clazz.ie$plit = "\\2".split (/\\/).length == 1; unnecessary; using RegEx slows process significantly in all browsers
 # _x_CLASS_NAME__ -> C$N
 # _x_PKG_NAME__ -> P$N
  Clazz.addProto(proto, "to$tring", Object.prototype.toString);
  		return this.to$tring.apply (this, arguments);
  			"equals", "hashCode", "getClass", "clone", "finalize", "notify", "notifyAll", "wait", "to$tring", "toString"
		s = s.replace (/^\s+/, "").replace (/\s+$/, ""); // .trim ()
		if (o != "b$" && o != "prototype" && o != "superClazz"
		if (o != "b$" && o != "prototype" && o != "superClazz"
					&& ss[0].con$truct != null) {
				ss[0].con$truct.apply (objThis, []);
		/*# {$no.debug.support} >>x #*/
			Clazz.pu$hCalling (new Clazz.callingStack (caller, clazzThis));
	if (clazzThis.con$truct != null) {
		clazzThis.con$truct.apply (objThis, []);
/*# {$no.debug.support} >>x #*/
			/*# {$no.debug.support} >>x #*/
					Clazz.pu$hCalling (new Clazz.callingStack (xcaller, owner));
					Clazz.pu$hCalling (new Clazz.callingStack (caller, owner));
/*# {$no.debug.support} >>x #*/
Clazz.expExpandParameters = function ($0, $1) {
	if ($1 == 'N') {
	} else if ($1 == 'B') {
	} else if ($1 == 'S') {
	} else if ($1 == 'O') {
	} else if ($1 == 'A') {
				.replace (/\$/g, "org.eclipse.s");
	var f$ = Clazz.getSignature(proto, funName, funBody, false);
  if (f$ == null || (f$.claxxOwner === clazzThis && f$.funParams == fpName)) {
    delete $fz;           // BH -- delete global variables when no longer needed
		if (f$.stacks == null) {
			oldFun = f$;
			if (f$.claxxOwner != null) {
			oldStacks = f$.stacks;
	if (f$.stacks == null 
			|| f$.claxxReference !== clazzThis) {
        //alert(f$.claxxReference + " " + clazzThis)
		f$ = Clazz.getSignature(proto, funName, Clazz.generateDelegatingMethod (clazzThis, funName, f$), true);				
		f$.stacks = arr;
	var ss = f$.stacks;
			f$[oldFun.funParams] = oldFun;
			f$["\\unknown"] = oldFun;
	f$[fpName] = funBody;
  delete $fz;           // BH -- delete global variables when no longer needed
	return f$;
	if (clazzThis.con$truct != null) {
		clazzThis.con$truct.index = clazzThis.con$truct.stacks.length;
	//clazzThis.con$truct = clazzThis.prototype.con$truct = null;
// $_k  @j2sOverrideConstructor
	if (clazzThis.con$truct != null) {
		clazzThis.con$truct.index = clazzThis.con$truct.stacks.length;
	//clazzThis.con$truct = clazzThis.prototype.con$truct = null;
	/*# {$no.javascript.support} >>x #*/
	if (objThis.con$truct != null) {
		objThis.con$truct.apply (objThis, args);
		if (objThis.con$truct == null) { // no need to init fields
			objThis.con$truct.apply (objThis, []);
			 * call #con$truct back
						&& c.claxxOwner.con$truct != null) {
				c.claxxOwner.con$truct.apply (objThis, []);
				c.stacks[0].con$truct.apply (objThis, []);
			objThis.con$truct.apply (objThis, []);
	} else if (objThis.con$truct != null) {
		objThis.con$truct.apply (objThis, []);
	"equals", "hashCode", /*"toString",*/ "getName", "getClassLoader", "getResourceAsStream" /*# {$no.javascript.support} >>x #*/, "defineMethod", "defineStaticMethod",
	}/*# {$no.javascript.support} >>x #*/,
		regexp = new RegExp("^"+str+"$");
var $$o$$ = null;
	$$o$$.hello ();
		Clazz._exceptionNPERegExp = Clazz._ex_reg(e.message, "$$o$$");
	var cbName = "b$"; // "callbacks";
			obs[className.replace (/org\.eclipse\.swt\./, "$wt.")] = classThisObj;
						.replace (/org\.eclipse\.swt\./, "$wt.")] = classThisObj;
 * @param classInner given inner class, alway with name like "*$*"
	if (finalVars == null && objThis.$finals == null) {
		// f$ is short for the once choosen "$finals"
		if (finalVars != null && objThis.f$ == null) {
			obj.f$ = finalVars;
		} else if (finalVars == null && objThis.f$ != null) {
			obj.f$ = objThis.f$;
		} else if (finalVars != null && objThis.f$ != null) {
			for (var attr in objThis.f$) {
				o[attr] = objThis.f$[attr];
			obj.f$ = o;
	if (finalVars != null && objThis.$finals == null) {
		obj.$finals = finalVars;
	} else if (finalVars == null && objThis.$finals != null) {
		obj.$finals = objThis.$finals;
	} else if (finalVars != null && objThis.$finals != null) {
		for (var attr in objThis.$finals) {
			o[attr] = objThis.$finals[attr];
		obj.$finals = o;
	if (clazzEnum["$ values"] == null) {  // BH added
	  clazzEnum["$ values"] = []          // BH added
	    return this["$ values"];          // BH added
	clazzEnum["$ values"].push(o);
$_AI=Clazz.newIntArray;
$_AF=Clazz.newFloatArray;
$_AD=Clazz.newDoubleArray;
$_AL=Clazz.newLongArray;
$_AS=Clazz.newShortArray;
$_AB=Clazz.newByteArray;
$_AC=Clazz.newCharArray;
$_Ab=Clazz.newBooleanArray;
	if (clazz.con$truct != null) {
		var ss = clazz.con$truct.stacks;
		var idx = 0;//clazz.con$truct.index;
	Clazz.addProto(clazz.prototype, "con$truct", clazz.con$truct = function () {
	clazz.con$truct.stacks = stacks;
	clazz.con$truct.index = 0;
	if (clazz.declared$Fields != null) {
		for (var i = 0; i < clazz.declared$Fields.length; i++) {
			newArr[i] = clazz.declared$Fields[i];
	clazz.declared$Fields = newArr;
		var fs = clazz.declared$Fields;
 *			var $private = Clazz.checkPrivateMethod (arguments);
 *			if ($private != null) {
 *				return $private.apply (this, arguments);
$fz = null; // for private method declaration
//var cla$$ = null;
c$ = null;
/*-# cla$$$tack -> cst  #-*/
Clazz.cla$$$tack = new Array ();
Clazz.pu$h = function () {
	if (c$ != null) { // if (cla$$ != null) {
		Clazz.cla$$$tack[Clazz.cla$$$tack.length] = c$; // cla$$;
	if (Clazz.cla$$$tack.length > 0) {
		var clazz = Clazz.cla$$$tack[Clazz.cla$$$tack.length - 1];
		Clazz.cla$$$tack.length--;
/*# {$no.debug.support} >>x #*/
Clazz.pu$hCalling = function (stack) {
  delete c$;           // BH -- delete global variables when no longer needed?
w$ = window; // Short for browser's window object
d$ = document; // Short for browser's document object
$_L=Clazz.load;
$_W=Clazz.declareAnonymous;$_T=Clazz.declareType;
$_J=Clazz.declarePackage;$_C=Clazz.decorateAsClass;
$_Z=Clazz.instantialize;$_I=Clazz.declareInterface;$_D=Clazz.isClassDefined;
$_H=Clazz.pu$h;$_P=Clazz.p0p;$_B=Clazz.prepareCallback;
$_N=Clazz.innerTypeInstance;$_K=Clazz.makeConstructor;$_U=Clazz.superCall;$_R=Clazz.superConstructor;
$_M=Clazz.defineMethod;$_V=Clazz.overrideMethod;$_S=Clazz.defineStatics;
$_E=Clazz.defineEnumConstant;
$_F=Clazz.cloneFinals;
$_Y=Clazz.prepareFields;$_A=Clazz.newArray;$_O=Clazz.instanceOf;
$_G=Clazz.inheritArgs;$_X=Clazz.checkPrivateMethod;$_Q=Clazz.makeFunction;
$_s=Clazz.registerSerializableFields;
$_k=Clazz.overrideConstructor;
				if (c.indexOf (qClazzName + "$") == 0) {
				if (c.indexOf (pkgFrags[pkgFrags.length - 1] + "$") == 0) {
				if (c.indexOf (qClazzName + "$") == 0) {
		if (!handler.$$guid) handler.$$guid = Clazz.addEvent.guid++;
		handlers[handler.$$guid] = handler;
			delete element.events[type][handler.$$guid];
		this.$$handleEvent = handlers[i];
		if (typeof this.$$handleEvent != "function") {
		if (this.$$handleEvent(event) === false) {
 * Clazz.load (..., "$wt.widgets.Control", ...);
 * <code>$_L(["$wt.graphics.Drawable","$wt.widgets.Widget"],
 *  "$wt.widgets.Control", ...</code>
 * <code>$_L(["$wt.widgets.Widget", "$wt.graphics.Drawable"],
 *  "$wt.widgets.Control", ...</code>
 # ClazzNode -> $CN$
 # ClazzLoader -> $CL$
 # <<< ClazzLoader = $CL$;
/*# {$clazz.existed} >>x #*/
	/*# {$no.clazzloader.mode} >>x #*/
/*# {$no.clazzloader.mode} >>x #*/
 * $wt.widgets.Shell, $.Display, $.Decorations
 * in which "$wt." stands for "org.eclipse.swt.", and "$." stands for
		if (arr[i].charAt (0) == '$') {
	ClazzLoader.classpathMap["$" + jar] = clazzes;
			if (oldVersion != "$") {
			if (newVersion != "$") {
		  var xhr = Jmol.$ajax(info);
	var clazzes = ClazzLoader.classpathMap["$" + file];
$_L(["$wt.graphics.Drawable","$wt.widgets.Widget"],"$wt.widgets.Control",
$_L(["$wt.widgets.Widget","$wt.graphics.Drawable"],"$wt.widgets.Control", 
	if (clazz.charAt (0) == '$') {
	if (window["$_L"] != null) {
		$_L = Clazz.load;
	if (name.indexOf (swtPkg) == 0 || name.indexOf ("$wt") == 0) {
	if (clazz.charAt (0) == '$') {
					|| child.name.indexOf ("$wt") == 0) {
		var arr = ClazzLoader.classpathMap["$" + pp];
			ClazzLoader.classpathMap["$" + pp] = arr;
		if (clzzName.indexOf ("$") != -1) return;
		var key = clzzName + "$";

---------- JSMOL.JS
      var container = Jmol.$(this, "appletdiv");
//				Math.floor(Jmol.$(this, "appletdiv").height()));
		var container = Jmol.$(applet, "appletdiv");
      //$("body").removeChild(d);
	  	//$("body").append(d);

---------- JSMOLAPI.JS
	  ["$", "NCI(small molecules)"],
    Jmol.$html(divid, applet._code);

---------- JSMOLAPPLET.JS

---------- JSMOLCONTROLS.JS

---------- JSMOLCORE.JS
			_databasePrefixes: "$=:",
				"$": "http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True",
				"$$": "http://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf",
(function (Jmol, $) {
  Jmol.$ = function(appletOrId, what) {
		return $("#" + appletOrId._id + (what ? "_" + what : ""));
  Jmol.$ajax = function (info) {
    return $.ajax(info);
  Jmol.$attr = function (id, a, val) {
    return $("#" + id).attr(a, val);
  Jmol.$bind = function(id, list, f) {
    return (f ? $(id).bind(list, f) : $(id).unbind(list));
  Jmol.$html = function(id, html) {
    return $("#" + id).html(html);
  Jmol.$offset = function (id) {
    return $("#" + id).offset();
  Jmol.$on = function (evt, f) {
    return $(window).on(evt, f);
  Jmol.$resize = function (f) {
    return $(window).resize(f);
  Jmol.$submit = function(form) {
    return $("#" + form).submit();
  Jmol.$val = function (id, v) {
    return $("#" + id).val(v);
  ;(function($,c,b){
  $.map("click mousemove mouseup touchmove touchend".split(" "),function(d){a(d)});
  	var d=$(),h=g+"."+e+"-special-event";
  	$.event.special[e]={
  				$(c).bind(h,f)
  				$(c).unbind(h)
  		$(d).each(function(){
  			var j=$(this);
    delete $;
    delete c$;
    delete d$;
    delete w$;      
    delete $_A;
    delete $_AB;
    delete $_AC;
    delete $_AD;
    delete $_AF;
    delete $_AI;
    delete $_AL;
    delete $_AS;
    delete $_Ab;
    delete $_B;
    delete $_C;
    delete $_D;
    delete $_E;
    delete $_F;
    delete $_G;
    delete $_H;
    delete $_I;
    delete $_J;
    delete $_K;
    delete $_L;
    delete $_M;
    delete $_N;
    delete $_O;
    delete $_P;
    delete $_Q;
    delete $_R;
    delete $_S;
    delete $_T;
    delete $_U;
    delete $_V;
    delete $_W;
    delete $_X;
    delete $_Y;
    delete $_Z;
    delete $_k;
    delete $_s;
    delete $t$;
		features.supportsXhr2 = function() {return ($.support.cors || $.support.iecors)}
	  	return Jmol.$ajax(info).responseText;
		info && Jmol.$ajax(info);
	  ["$", "NCI(small molecules)"],
		Jmol.$attr("__jsmolform__", "action", url + "?" + (new Date()).getMilliseconds());
		Jmol.$val("__jsmoldata__", data);
		Jmol.$val("__jsmolfilename__", filename);
		Jmol.$val("__jsmolmimetype__", mimetype);
		Jmol.$val("__jsmolencoding__", encoding);
		Jmol.$submit("__jsmolform__");
		Jmol.$val("__jsmoldata__", "");
		return (database == "$" ? Jmol.db._nciLoadScript : database == ":" ? Jmol.db._pubChemLoadScript : Jmol.db._fileLoadScript);
			case "$": // NCI
  		database = (applet._hasOptions ? Jmol._getElement(applet, "select").value : "$");
  	if (database == "$" || database == ":")
    var cantDoSynchronousLoad = (!isMyHost && $.support.iecors);
		var xhr = Jmol.$ajax(info);
		if (database == "$" || database == ":")
      Jmol.$on('beforeunload', function () { Jmol._destroy(applet); } );
		var offsets = Jmol.$offset(canvas.id);
			var offsets = Jmol.$offset(canvas.id);
		Jmol.$bind(canvas, 'mousedown touchstart', function(ev) {
		Jmol.$bind(canvas, 'mouseup touchend', function(ev) {
		Jmol.$bind(canvas, 'mousemove touchmove', function(ev) { // touchmove
		Jmol.$bind(canvas, 'DOMMouseScroll mousewheel', function(ev) { // Zoom
		Jmol.$bind(canvas, "contextmenu", function() {return false;});
		Jmol.$bind(canvas, 'mouseout', function(ev) {
		Jmol.$bind(canvas, 'mouseenter', function(ev) {
    	Jmol.$resize(function() {
		Jmol.$bind('body', 'mouseup touchend', function(ev) {
		Jmol.$bind(canvas, 'mousedown touchstart mousemove touchmove mouseup touchend DOMMouseScroll mousewheel contextmenu mouseout mouseenter', null);
      var offsets = Jmol.$offset(id);

---------- JSMOLGLMOL.JS
// update 3/27/2013 6:14:21 PM -- broken implementing  Jmol.$
THREE.ShaderLib.lambert.vertexShader = THREE.ShaderLib.lambert.vertexShader.replace(/\}$/, "#ifdef DOUBLE_SIDED\n if (transformedNormal.z < 0.0) vLightFront = vLightBack;\n #endif\n }");
	this.container = Jmol.$(this.applet, "appletdiv");
	Jmol.$resize(function() { // only window can capture resize event

---------- JSMOLJME.JS
		if (database == "$")
			query = "$" + query; // 2D variant
				    Jmol.script(jmol, "load \"$" + jmeSMILES + "\"");

---------- JSMOLJQUERY.JS
	// Map over the $ in case of overwrite
	_$ = window.$,
	quickExpr = /^(?:[^#<]*(<[\w\W]+>)[^>]*$|#([\w\-]*)$)/,
	trimRight = /\s+$/,
	rsingleTag = /^<(\w+)\s*\/?>(?:<\/\1>)?$/,
	rvalidchars = /^[\],:{}\s]*$/,
		// Handle $(""), $(null), or $(undefined)
		// Handle $(DOMElement)
				// HANDLE: $(html) -> $(array)
				// HANDLE: $("#id")
			// HANDLE: $(expr, $(...))
			// HANDLE: $(expr, context)
			// (which is just equivalent to: $(context).find(expr)
		// HANDLE: $(function)
		if ( window.$ === jQuery ) {
			window.$ = _$;
		// Catch cases where $(document).ready() is called after the
	trimRight = /[\s\xA0]+$/;
var rbrace = /^(?:\{.*\}|\[.*\])$/,
		var name = "data-" + key.replace( rmultiDash, "-$1" ).toLowerCase();
	rtype = /^(?:button|input)$/i,
	rfocusable = /^(?:button|input|object|select|textarea)$/i,
	rclickable = /^a(?:rea)?$/i,
	rboolean = /^(?:autofocus|autoplay|async|checked|controls|defer|disabled|hidden|loop|multiple|open|readonly|required|scoped|selected)$/i,
var rformElems = /^(?:textarea|input|select)$/i,
	rtypenamespace = /^([^\.]*)?(?:\.(.+))?$/,
	rfocusMorph = /^(?:focusinfocus|focusoutblur)$/,
	rquickIs = /^(\w*)(?:#([\w\-]+))?(?:\.([\w\-]+))?$/,
			quick[3] = quick[3] && new RegExp( "(?:^|\\s)" + quick[3] + "(?:\\s|$)" );
		return jQuery.event.special.hover ? events : events.replace( rhoverHack, "mouseenter$1 mouseleave$1" );
			namespaces = namespaces ? new RegExp("(^|\\.)" + namespaces.split(".").sort().join("\\.(?:.*\\.)?") + "(\\.|$)") : null;
		event.namespace_re = event.namespace? new RegExp("(^|\\.)" + namespaces.join("\\.(?:.*\\.)?") + "(\\.|$)") : null;
		POS: /:(nth|eq|gt|lt|first|last|even|odd)(?:\((\d*)\))?(?=[^\-]|$)/,
				type === "$=" ?
				var match = /^(\w+$)|^\.([\w\-]+$)|^#([\w\-]+$)/.exec( query );
						nid = nid.replace( /'/g, "\\$&" );
			expr = expr.replace(/\=\s*([^'"\]]*)\s*\]/g, "='$1']");
var runtil = /Until$/,
	isSimple = /^.[^:#\[\.,]*$/,
				// so $("p:first").is("p:last") won't return true for a doc with two "p".
				value = value.replace( rxhtmlTag, "<$1></$2>" );
						jQuery.globalEval( ( elem.text || elem.textContent || elem.innerHTML || "" ).replace( rcleanScript, "/*$0*/" ) );
					elem = elem.replace(rxhtmlTag, "<$1></$2>");
	rnum = /^[\-+]?(?:\d*\.)?\d+$/i,
	rnumnonpx = /^-?(?:\d*\.)?\d+(?!px)[^\d\s]+$/i,
		name = name.replace( rupper, "-$1" ).toLowerCase();
				( parseFloat( RegExp.$1 ) / 100 ) + "" :
	rbracket = /\[\]$/,
	rhash = /#.*$/,
	rheaders = /^(.*?):[ \t]*([^\r\n]*)\r?$/mg, // IE leaves an \r character at EOL
	rinput = /^(?:color|date|datetime|datetime-local|email|hidden|month|number|password|range|search|tel|text|time|url|week)$/i,
	rlocalProtocol = /^(?:about|app|app\-storage|.+\-extension|file|res|widget):$/,
	rnoContent = /^(?:GET|HEAD)$/,
					ret = s.url.replace( rts, "$1_=" + ts );
	jsre = /(\=)\?(&|$)|\?\?/i;
			replace = "$1" + jsonpCallback + "$2";
	rfxtypes = /^(?:toggle|show|hide)$/,
	rfxnum = /^([+\-]=)?([\d+.\-]+)([a-z%]*)$/i,
					// not quite $.extend, this wont overwrite keys already present.
	rtable = /^t(?:able|d|h)$/i,
	rroot = /^(?:body|html)$/i;
window.jQuery = window.$ = jQuery;

---------- JSMOLJSV.JS

---------- JSMOLTHREE.JS

---------- JSMOLTM.JS
  ["$", "NCI(small molecules)"],
  var container = Jmol.$(this, "appletdiv");

---------- T