The manually curated dataset is adapted from the work of Xin et al. 2008 plus several new riboswitch and ribozyme structures. The complete list of manually curated structures is provided below:

Reference
Xin Y, Laing C, Leontis NB and Schlick T (2008) Annotation of tertiary interactions in
RNA structures reveals variations and correlations. RNA 14: 2465-2477.


PDBID Structure Description RNA_Class Resolution
1c0a
CRYSTAL STRUCTURE OF THE E. COLI ASPARTYL-TRNA SYNTHETASE : TRNAASP : ASPARTYL-ADENYLATE COMPLEX tRNA 2.4 Å
1ehz
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution tRNA 1.9 Å
1et4
CRYSTAL STRUCTURE OF A VITAMIN B12 BINDING RNA APTAMER WITH LIGAND AT 2.3 A aptamer 2.3 Å
1f1t
CRYSTAL STRUCTURE OF THE MALACHITE GREEN APTAMER COMPLEXED WITH TETRAMETHYL-ROSAMINE aptamer 2.8 Å
1f27
Crystal structure of a biotin-binding RNA pseudoknot other-RNA 1.3 Å
1f7y
THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY rRNA 2.8 Å
1feu
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5 ONE OF THE CTC FAMILY PROTEINS COMPLEXED WITH A FRAGMENT OF 5S RRNA rRNA 2.3 Å
1ffk
CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION rRNA 2.4 Å
1g1x
STRUCTURE OF RIBOSOMAL PROTEINS S15 S6 S18 AND 16S RIBOSOMAL RNA rRNA 2.6 Å
1hq1
STRUCTURAL AND ENERGETIC ANALYSIS OF RNA RECOGNITION BY A UNIVERSALLY CONSERVED PROTEIN FROM THE SIGNAL RECOGNITION PARTICLE protein-RNA 1.5 Å
1hr2
CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON ribozyme 2.2 Å
1j5e
Structure of the Thermus thermophilus 30S Ribosomal Subunit rRNA 3.0 Å
1jzv
Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA other-RNA 1.7 Å
1kh6
Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation other-RNA 2.9 Å
1kxk
Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron ribozyme 3.0 Å
1l2x
Atomic Resolution Crystal Structure of a Viral RNA Pseudoknot other-RNA 1.2 Å
1l9a
CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA protein-RNA 2.9 Å
1m5k
Crystal structure of a hairpin ribozyme in the catalytically-active conformation ribozyme 2.4 Å
1mhk
The crystal structure of a 26-nucleotide RNA containing a hook-turn other-RNA 2.5 Å
1mms
Crystal structure of the ribosomal PROTEIN L11-RNA complex rRNA 2.5 Å
1mzp
Structure of the L1 protuberance in the ribosome rRNA 2.6 Å
1n78
Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP tRNA 2.1 Å
1ntb
2.9 A crystal structure of Streptomycin RNA-aptamer complex aptamer 2.9 Å
1nyi
Crosslinked Hammerhead Ribozyme Initial State ribozyme 2.8 Å
1q9a
Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution other-RNA 1.0 Å
1ser
THE 2.9 ANGSTROMS CRYSTAL STRUCTURE OF T. THERMOPHILUS SERYL-TRNA SYNTHETASE COMPLEXED WITH TRNA SER tRNA 2.9 Å
1sj3
Hepatitis Delta Virus Gemonic Ribozyme Precursor with Mg2+ Bound ribozyme 2.2 Å
1u0b
Crystal structure of cysteinyl-tRNA synthetase binary complex with tRNACys tRNA 2.3 Å
1u9s
Crystal structure of the specificity domain of Ribonuclease P of the A-type ribozyme 2.9 Å
1xjr
The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome other-RNA 2.7 Å
1y26
A-riboswitch-adenine complex riboswitch 2.1 Å
2fk6
Crystal Structure of RNAse Z/tRNA(Thr) complex tRNA 2.9 Å
2gcv
Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme ribozyme 2.1 Å
2gdi
Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate riboswitch 2.0 Å
2gis
Structure of the S-adenosylmethionine riboswitch mRNA regulatory element riboswitch 2.9 Å
2hw8
Structure of ribosomal protein L1-mRNA complex at 2.1 resolution protein-RNA 2.1 Å
2oiu
L1 Ribozyme Ligase circular adduct ribozyme 2.6 Å
2ozb
Structure of a human Prp31-15.5K-U4 snRNA complex protein-RNA 2.6 Å
2qwy
SAM-II riboswitch bound to S-adenosylmethionine riboswitch 2.8 Å
2vpl
THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII protein-RNA 2.3 Å
2xdb
A PROCESSED NON-CODING RNA REGULATES A BACTERIAL ANTIVIRAL SYSTEM protein-RNA 2.5 Å
3d2v
Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate riboswitch 2.0 Å
3dil
Crystal structure of the Thermotoga maritima lysine riboswitch bound to lysine riboswitch 1.9 Å
3e5c
Crystal Structure of the SMK box (SAM-III) Riboswitch with SAM riboswitch 2.2 Å
3egz
Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch aptamer 2.2 Å
3f2q
Crystal structure of the FMN riboswitch bound to FMN riboswitch 2.9 Å
3fu2
Cocrystal structure of a class-I preQ1 riboswitch riboswitch 2.8 Å
3g78
Insight into group II intron catalysis from revised crystal structure ribozyme 2.8 Å
3gs1
An all-RNA Hairpin Ribozyme with mutation A38N1dA ribozyme 2.8 Å
3hhn
Crystal structure of class I ligase ribozyme self-ligation product in complex with U1A RBD ribozyme 2.9 Å
3iab
Crystal structure of RNase P /RNase MRP proteins Pop6 Pop7 in a complex with the P3 domain of RNase MRP RNA ribozyme 2.7 Å
3l0u
The crystal structure of unmodified tRNAPhe from Escherichia coli tRNA 3.0 Å
3l3c
Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P ribozyme 2.8 Å
3mxh
Native structure of a c-di-GMP riboswitch from V. cholerae riboswitch 2.3 Å
3ndb
Crystal structure of a signal sequence bound to the signal recognition particle protein-RNA 3.0 Å
3nkb
A 1.9A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage ribozyme 1.9 Å
3oww
Crystal structure of the glycine riboswitch bound to glycine riboswitch 2.8 Å
3p22
Crystal structure of the ENE a viral RNA stability element in complex with A9 RNA other-RNA 2.5 Å
3pdr
Crystal structure of manganese bound M-box RNA riboswitch 1.8 Å
3q3z
Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP riboswitch 2.5 Å
3sd1
The structure of a tetrahydrofolate riboswitch riboswitch 2.2 Å
3ski
Crystal structure of the 2'- Deoxyguanosine riboswitch bound to 2'-deoxyguanosine riboswitch 2.3 Å
430d
STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA other-RNA 2.1 Å
4enc
Crystal structure of fluoride riboswitch riboswitch 2.2 Å