PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1h2i DNA REPAIR PROTEIN RAD52 HOMOLOG
Homo sapiens
Rad52_Rad22ASN A  73
ASN B 160
ASN B 164
None
homomer
cyclic
12370410
1k2x PUTATIVE L-ASPARAGINASE
Escherichia coli
Asparaginase_2ASN A  90
ASN B 190
ASN B 222
None
heteromer
cyclic
18323626
1ky9 PROTEASE DO
Escherichia coli
PDZ
Trypsin_2
ASN A 206
ASN B 206
ASN C 206
None
homomer
dihedral
11919638
1t5r LUKS-PV
Staphylococcus phage PVL
-ASN C 104
ASN C 138
ASN G 112
None
homomer
asymmetric
15262988
1vbf 231AA LONG HYPOTHETICAL PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE
Sulfurisphaera tokodaii
-ASN B 226
ASN D 226
ASN F 226
None
homomer
dihedral
15169774
1wt6 MYOTONIN-PROTEIN KINASE
Homo sapiens
DMPK_coilASN A  37
ASN B  37
ASN D  37
None
homomer
cyclic
16770013
1yu0 MAJOR TROPISM DETERMINANT (MTD-P1)
Bordetella virus BPP1
Mtd_NASN A 254
ASN A 256
ASN B 311
None
homomer
cyclic
16170324
2bzv FIBER PROTEIN 2
Human mastadenovirus F
Adeno_knobASN A 259
ASN B 259
ASN C 259
None
homomer
cyclic
16254343
2c2j DNA-BINDING STRESS RESPONSE PROTEIN
Deinococcus radiodurans
FerritinASN A 167
ASN C 167
ASN E 167
None
homomer
tetrahedral
17583727
2fkk BASEPLATE STRUCTURAL PROTEIN GP10
Escherichia virus T4
-ASN A 588
ASN B 588
ASN C 588
 BR A 701
 BR B 701
homomer
cyclic
16554069
2rij PUTATIVE 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N- SUCCINYLTRANSFERASE
Campylobacter jejuni
Hexapep_2
THDPS_M
THDPS_N
ASN A 301
ASN B 301
ASN C 301
None
homomer
dihedral
-
2vfm BIFUNCTIONAL TAIL PROTEIN
Salmonella virus P22
PhageP22-tailASN A 474
ASN B 474
ASN C 474
None
homomer
cyclic
-
2vji TAILSPIKE PROTEIN
Salmonella virus HK620
Phage_spike_2ASN A 415
ASN B 415
ASN C 415
None
homomer
cyclic
18547389
2wb3 HYALURONIDASE-PHAGE ASSOCIATED
Streptococcus pyogenes
Hyaluronidase_1ASN A 235
ASN A 238
ASN D 254
None
homomer
dihedral
19850999
2wu8 GLUCOSE-6-PHOSPHATE ISOMERASE
Mycobacterium tuberculosis
PGIASN A 186
ASN B 342
ASN B 385
None
homomer
cyclic
20445242
2yhe SEC-ALKYL SULFATASE
Pseudomonas sp. DSM 6611
Alkyl_sulf_C
Alkyl_sulf_dimr
Lactamase_B
ASN A 438
ASN A 441
ASN D 485
None
homomer
cyclic
23061549
2yvv HYALURONIDASE, PHAGE ASSOCIATED
Streptococcus pyogenes
Hyaluronidase_1ASN A 183
ASN A 186
ASN B 202
LBT A2001
homomer
cyclic
-
2yzj 167AA LONG HYPOTHETICAL DUTPASE
Sulfurisphaera tokodaii
dUTPaseASN A  76
ASN B  76
ASN C  76
TRS A6646
homomer
cyclic
-
3ak8 DNA PROTECTION DURING STARVATION PROTEIN
Salmonella enterica
FerritinASN A  58
ASN H  58
ASN K  58
None
homomer
tetrahedral
21206015
3b9w AMMONIUM TRANSPORTER FAMILY
Nitrosomonas europaea
Ammonium_transpASN A  18
ASN B  18
ASN C  18
None
homomer
cyclic
18032606
3bh1 UPF0371 PROTEIN DIP2346
Corynebacterium diphtheriae
-ASN B 120
ASN B 122
ASN C 122
None
homomer
dihedral
-
3c9i TAIL NEEDLE PROTEIN GP26
Salmonella virus P22
-ASN A1063
ASN B1063
ASN C1063
 CA A   1
homomer
asymmetric
19241380
3cnc FIBER PROTEIN
Human mastadenovirus B
Adeno_knobASN A 193
ASN B 193
ASN C 193
None
homomer
cyclic
18524830
3dd7 DEATH ON CURING PROTEIN
PREVENT HOST DEATH PROTEIN
Escherichia virus P1
-ASN A  16
ASN A  78
ASN B  67
None
monomer
asymmetric
18757857
3f1x SERINE ACETYLTRANSFERASE
Bacteroides vulgatus
HexapepASN A 263
ASN B 263
ASN C 263
None
homomer
dihedral
-
3f6c POSITIVE TRANSCRIPTION REGULATOR EVGA
Escherichia coli
Response_regASN A 107
ASN A 108
ASN B 118
None
homomer
cyclic
-
3gwj ARYLPHORIN
Antheraea pernyi
Hemocyanin_C
Hemocyanin_M
Hemocyanin_N
ASN A 323
ASN B 323
ASN C 323
None
homomer
dihedral
19358695
3htn PUTATIVE DNA BINDING PROTEIN
Bacteroides thetaiotaomicron
DUF296ASN A 116
ASN B 116
ASN C 116
None
homomer
cyclic
-
3hwu PUTATIVE DNA-BINDING PROTEIN
Cupriavidus pinatubonensis
DUF296ASN A 102
ASN B 102
ASN C 102
None
homomer
cyclic
-
3iac GLUCURONATE ISOMERASE
Salmonella enterica
UxaCASN A 327
ASN B 327
ASN C 327
None
homomer
cyclic
-
3ii6 DNA REPAIR PROTEIN XRCC4
Homo sapiens
XRCC4ASN A 141
ASN B 137
ASN B 141
None
heteromer
asymmetric
19332554
3krt CROTONYL COA REDUCTASE
Streptomyces coelicolor
ADH_N
ADH_zinc_N
ASN A 161
ASN B 222
ASN B 372
None
homomer
dihedral
-
3l4f RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 7
Rattus norvegicus
betaPIX_CCASN A 608
ASN B 608
ASN C 608
None
heteromer
asymmetric
20117114
3mjg BETA-TYPE PLATELET-DERIVED GROWTH FACTOR RECEPTOR
PLATELET-DERIVED GROWTH FACTOR SUBUNIT B
Homo sapiens
PDGF
PDGF_N
ASN A  34
ASN A  36
ASN Y 244
None
heteromer
cyclic
20534510
3nz2 HEXAPEPTIDE-REPEAT CONTAINING-ACETYLTRANSFERASE
Vibrio cholerae
Hexapep
Mac
ASN A 141
ASN B 141
ASN C 141
None
homomer
dihedral
-
3pqi GENE PRODUCT 138
unidentified phage
Gp138_NASN A  68
ASN B  68
ASN C  68
None
homomer
cyclic
22325780
3qbq TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 11
Mus musculus
TNFASN A 275
ASN C 275
ASN E 275
None
heteromer
cyclic
21059944
3r5d TETRAHYDRODIPICOLINATE N-SUCCINYLETRANSFERASE
Pseudomonas aeruginosa
Hexapep_2
THDPS_M
THDPS_N
ASN A 265
ASN B 265
ASN C 265
None
homomer
cyclic
22359568
3tg7 HEXON PROTEIN
Human mastadenovirus C
Adeno_hexon
Adeno_hexon_C
ASN A 121
ASN B 823
ASN B 824
None
homomer
cyclic
-
3tk8 2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N-SUCCINYLTRANSFERASE
Burkholderia pseudomallei
Hexapep
Hexapep_2
THDPS_N_2
ASN A 276
ASN B 276
ASN C 276
None
homomer
cyclic
-
3twd BIFUNCTIONAL PROTEIN GLMU
Escherichia coli
HexapepASN A 277
ASN B 277
ASN C 277
None
homomer
cyclic
21984832
3x30 UPF0173 METAL-DEPENDENT HYDROLASE TM_1162
Thermotoga maritima
Lactamase_B_2ASN A 123
ASN B 123
ASN C 123
None
homomer
cyclic
-
4aq1 NBKB6
SBSB PROTEIN
Geobacillus stearothermophilus
Lama glama
V-setASN A 392
ASN A 412
ASN B 103
None
heteromer
asymmetric
22722836
4e6u ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE
Acinetobacter baumannii
Acetyltransf_11
Hexapep
ASN A 119
ASN B 119
ASN C 119
None
homomer
cyclic
23192027
4e79 UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE
Acinetobacter baumannii
Hexapep
Hexapep_2
LpxD
ASN A 217
ASN B 217
ASN C 217
None
homomer
cyclic
23295477
4eqy ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE
Burkholderia thailandensis
Acetyltransf_11
Hexapep
ASN A 135
ASN B 135
ASN C 135
None
homomer
cyclic
23382856
4fdx 4-OXALOCROTONASE TAUTOMERASE ISOZYME
Methylibium petroleiphilum
TautomeraseASN A  43
ASN C  43
ASN E  43
None
homomer
dihedral
23831510
4fln PROTEASE DO-LIKE 2, CHLOROPLASTIC
Arabidopsis thaliana
PDZ_2
Trypsin_2
ASN A 294
ASN B 294
ASN C 294
None
homomer
dihedral
22961982
4ihf UDP-3-O-(3-HYDROXYMYRISTOYL)GLUCOSAMINE N-ACYLTRANSFERASE
Escherichia coli
Hexapep
Hexapep_2
LpxD
ASN D 121
ASN E 121
ASN F 121
None
heteromer
cyclic
24196711
4ija XYLR PROTEIN
Staphylococcus aureus
MarR
ROK
ASN A 223
ASN B 307
ASN B 338
None
homomer
cyclic
23733184
4oje EFF-1A
Caenorhabditis elegans
EFF-AFFASN H 171
ASN A 171
ASN B 171
None
homomer
cyclic
24725407
4r42 ALR3090 PROTEIN
Nostoc sp. PCC 7120
Mn_catalaseASN A 109
ASN C 109
ASN F 109
 CA F 303
homomer
dihedral
26826576
4ru3 PUNCTURING PROTEIN GP41
Pseudomonas virus SN
-ASN A 209
ASN B 209
ASN C 209
 CA A 302
homomer
cyclic
-
4tlh ETHANOLAMINE UTILIZATION PROTEIN EUTL
Clostridium perfringens
BMCASN A  74
ASN B  74
ASN C  74
 NA A 301
homomer
cyclic
-
4twk POTASSIUM CHANNEL SUBFAMILY K MEMBER 2
Homo sapiens
Ion_trans_2ASN A 111
ASN A 147
ASN B 147
None
homomer
cyclic
-
5hyn HISTONE-LYSINE N-METHYLTRANSFERASE EZH2
POLYCOMB PROTEIN SUZ12
Homo sapiens
EZH2_WD-Binding
VEFS-Box
SET
ASN A 263
ASN C 607
ASN C 655
None
heteromer
asymmetric
27121947
5izs DESIGNED PROTEIN 5L6HC3_1
synthetic construct
-ASN A  14
ASN B  14
ASN C  14
None
homomer
cyclic
27151862
5j0h DESIGN CONSTRUCT 2L6HC3_13
synthetic construct
Syntaxin-6_NASN A  46
ASN B  46
ASN C  46
None
homomer
cyclic
27151862
5ko5 PURINE NUCLEOSIDE PHOSPHORYLASE
Schistosoma mansoni
PNP_UDP_1ASN A 146
ASN B 146
ASN C 146
None
homomer
cyclic
30192840
5ovn POL PROTEIN
Feline immunodeficiency virus
RNase_H
RVT_1
RVT_connect
RVT_connect
RVT_thumb
RVT_thumb
ASN A 494
ASN B 287
ASN B 289
None
heteromer
asymmetric
29364950
5vmk BIFUNCTIONAL PROTEIN GLMU
Acinetobacter baumannii
Hexapep
Hexapep_2
NTP_transf_3
ASN A 274
ASN B 274
ASN C 274
None
homomer
cyclic
-
5wtr UNCHARACTERIZED PROTEIN
Saccharolobus solfataricus
UPF0126ASN A 142
ASN B 142
ASN C 142
  K A 303
homomer
cyclic
-
5wuc UNCHARACTERIZED PROTEIN
Sulfolobus acidocaldarius
UPF0126ASN A 144
ASN B 144
ASN C 144
 NA A 301
 NA B 301
 NA C 301
homomer
cyclic
28524849
6dhm GLUTAMATE DEHYDROGENASE 1, MITOCHONDRIAL
Bos taurus
ELFV_dehydrog
ELFV_dehydrog_N
ASN A 390
ASN B 390
ASN C 390
None
homomer
dihedral
21749647