PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1fs2 SKP1
SKP2
Homo sapiens
F-box-like
Skp1
Skp1_POZ
VAL A 132
VAL A 135
ILE B 127
ILE B 135
None
heteromer
cyclic
11099048
1h6w BACTERIOPHAGE T4 SHORT TAIL FIBRE
Escherichia virus T4
Collar
gp12-short_mid
VAL A 287
ILE A 288
VAL C 287
ILE C 288
None
homomer
cyclic
11743729
1pc6 PROTEIN NINB
Escherichia virus Lambda
NinBVAL A  21
ILE A  24
VAL A  34
ILE B  36
None
homomer
cyclic
16076958
1w9y 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 1
Petunia x hybrida
2OG-FeII_Oxy
DIOX_N
ILE A 171
VAL A 236
ILE A 237
VAL D  81
None
homomer
dihedral
15489165
1xvs PROTEIN APAG
Vibrio cholerae
DUF525ILE A  10
VAL A  12
ILE A  34
VAL B   3
None
homomer
cyclic
-
2ba0 ARCHAEAL EXOSOME RNA BINDING PROTEIN RRP4
ARCHAEAL EXOSOME RNA BINDING PROTEIN RRP41
Archaeoglobus fulgidus
ECR1_N
KH_6
RNase_PH
RNase_PH_C
S1
ILE A  34
VAL D 146
VAL D 149
ILE D 237
None
heteromer
cyclic
16285927
2bky DNA/RNA-BINDING PROTEIN ALBA 1
DNA/RNA-BINDING PROTEIN ALBA 2
Saccharolobus solfataricus
-ILE B  46
VAL B  72
ILE B  90
VAL Y  47
None
homomer
cyclic
16004869
2ds5 ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
Escherichia coli
zf-C4_ClpXILE A  35
VAL A  40
ILE B  35
VAL B  40
None
homomer
cyclic
17258768
2dvm 439AA LONG HYPOTHETICAL MALATE OXIDOREDUCTASE
Pyrococcus horikoshii
Malic_M
malic
VAL A  22
ILE A  23
VAL B  22
ILE B  23
None
homomer
cyclic
-
2o4v PORIN P
Pseudomonas aeruginosa
Porin_O_PVAL A   3
ILE A  10
VAL B   3
ILE C  12
None
homomer
cyclic
17187075
2qt7 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE-LIKE N
Homo sapiens
Receptor_IA-2VAL A  39
ILE A  59
VAL D  39
ILE D  59
None
homomer
cyclic
18048354
2zsj THREONINE SYNTHASE
Aquifex aeolicus
PALPILE A 132
ILE A 142
VAL B 339
VAL B 346
None
homomer
cyclic
-
3cjh MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM13
MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8
Saccharomyces cerevisiae
zf-Tim10_DDPVAL A  50
ILE A  53
ILE D  79
VAL D  80
None
heteromer
cyclic
18706423
3ebt UNCHARACTERIZED NTF2-LIKE PROTEIN
Burkholderia pseudomallei
SnoaL_2ILE A  76
VAL A  83
ILE B  76
VAL B  83
None
homomer
cyclic
-
3f1x SERINE ACETYLTRANSFERASE
Bacteroides vulgatus
HexapepILE A  52
ILE A  72
VAL A  76
VAL B  14
None
homomer
dihedral
-
3hb3 CYTOCHROME C OXIDASE SUBUNIT 1-BETA
CYTOCHROME C OXIDASE SUBUNIT 2
Paracoccus denitrificans
COX1
COX2
COX2_TM
VAL A 392
VAL B  38
ILE B  41
ILE B  42
None
heteromer
asymmetric
19374884
3hf1 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B
Homo sapiens
Ribonuc_red_smVAL A 108
ILE A 128
VAL B 108
ILE B 128
None
homomer
cyclic
19728742
3k4t VIRION-ASSOCIATED PROTEIN
Cauliflower mosaic virus
Cauli_DNA-bindILE A   7
VAL A  11
VAL C  11
ILE D   7
None
homomer
cyclic
20181714
3p1z PUTATIVE UNCHARACTERIZED PROTEIN
TRNA-SPLICING ENDONUCLEASE
Aeropyrum pernix
tRNA_int_endo
tRNA_int_endo
tRNA_int_endo_N
ILE A 151
VAL B 150
ILE B 152
VAL B 153
None
heteromer
cyclic
21846775
3sho TRANSCRIPTIONAL REGULATOR, RPIR FAMILY
Sphaerobacter thermophilus
SISVAL A 245
ILE A 248
VAL B 245
ILE B 248
None
homomer
dihedral
-
3u4j NAD-DEPENDENT ALDEHYDE DEHYDROGENASE
Sinorhizobium meliloti
AldedhILE A 444
ILE A 454
VAL B 492
VAL B 494
None
homomer
dihedral
-
3w34 URIDINE KINASE
Thermus thermophilus
PRKVAL A 182
ILE A 183
ILE B 183
VAL B 184
None
homomer
cyclic
26510656
3wmq GALACTOSE-BINDING LECTIN
Sinularia lochmodes
H_lectinILE A   3
ILE E   3
VAL E   5
VAL F   5
None
homomer
dihedral
26022515
3wx4 ANTI-RESTRICTION ENDONUCLEASE
Escherichia virus T4
-VAL A   8
ILE A  64
VAL B   8
ILE B  64
None
homomer
cyclic
25118281
3zg9 PENICILLIN-BINDING PROTEIN 4
Listeria monocytogenes
Transgly
Transpeptidase
ILE A  80
VAL B 296
VAL B 299
ILE B 321
None
heteromer
asymmetric
-
3zie SEPF-LIKE PROTEIN
Archaeoglobus fulgidus
SepFILE A  39
VAL B  96
ILE B 104
VAL B 112
None
homomer
cyclic
24218584
4dmi CAPSID PROTEIN
unidentified
-ILE A  39
ILE C  39
VAL C  41
VAL D  41
None
homomer
cyclic
-
4efa V-TYPE PROTON ATPASE SUBUNIT E
V-TYPE PROTON ATPASE SUBUNIT G
Saccharomyces cerevisiae
V-ATPase_G
vATP-synt_E
VAL G  94
VAL G  95
ILE E  99
ILE E 218
None
heteromer
asymmetric
23000382
4fuv PORIN PROTEIN ASSOCIATED WITH IMIPENEM RESISTANCE
Acinetobacter baumannii
-ILE A 128
VAL A 187
ILE B 128
VAL B 187
None
homomer
cyclic
-
4hrv PUTATIVE LIPOPROTEIN GNA1162
Neisseria meningitidis
DUF799ILE A 152
VAL B 171
VAL B 172
ILE B 175
None
homomer
cyclic
23545639
4ku0 TAIL-ASSOCIATED LYSOZYME
UNCHARACTERIZED 10.2 KDA PROTEIN IN SEGC-GP6 INTERGENIC REGION
Escherichia virus T4
PAAR_motifILE B 572
ILE C 574
VAL D  29
VAL D  69
None
heteromer
asymmetric
-
4uzr PUTATIVE UNCHARACTERIZED PROTEIN PH1500
Pyrococcus horikoshii
CDC48_2ILE A  88
VAL A  91
VAL A 100
ILE D 138
None
homomer
dihedral
-
4wjt UNCHARACTERIZED PROTEIN YUIC
Bacillus subtilis
3DILE A 192
ILE B 135
VAL B 148
VAL B 149
None
homomer
cyclic
26163297
4ys2 NA+/H+ ANTIPORTER-LIKE PROTEIN
Staphylococcus aureus
TrkA_CILE A 170
VAL A 172
ILE B 170
VAL B 172
2BA A 301
homomer
cyclic
-
5iwi DNA GYRASE SUBUNIT A
DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT B
Staphylococcus aureus
DNA_gyraseB_C
Toprim
DNA_topoisoIV
ILE B 532
VAL B 537
VAL B 606
ILE A  14
None
heteromer
cyclic
27055939
5k3w CPUTA1
Curtobacterium pusillum
Aminotran_4VAL A  42
ILE A  49
VAL B  42
ILE B  49
None
homomer
cyclic
27905516
5k9g GTP CYCLOHYDROLASE FOLE2
Neisseria gonorrhoeae
GCHY-1VAL A 219
VAL A 237
ILE A 254
ILE B  18
None
homomer
dihedral
28126741
5lds AMINOPEPTIDASE N
Sus scrofa
ERAP1_C
Peptidase_M1
VAL A 835
ILE A 868
VAL B 867
ILE B 868
None
homomer
cyclic
28393915
5nbc FERRIC UPTAKE REGULATION PROTEIN
Francisella tularensis
FURILE A  91
ILE A 129
VAL A 131
VAL D 115
None
homomer
dihedral
30271974
5nxf LONG-TAIL FIBER PROXIMAL SUBUNIT
Escherichia virus T4
-ILE A1269
VAL A1272
ILE C1274
VAL C1283
None
homomer
asymmetric
28665339
5nxh LONG-TAIL FIBER PROXIMAL SUBUNIT
Escherichia virus T4
-VAL A 788
ILE A 789
VAL C 788
ILE C 789
None
homomer
asymmetric
28665339
5tey N6-ADENOSINE-METHYLTRANSFERASE 70 KDA SUBUNIT
N6-ADENOSINE-METHYLTRANSFERASE SUBUNIT METTL14
Homo sapiens
MT-A70VAL A 458
ILE A 466
VAL A 504
ILE B 134
None
heteromer
asymmetric
-
5usc PREPHENATE DEHYDROGENASE
Bacillus anthracis
PDHVAL A 212
ILE A 222
ILE B 196
VAL B 197
None
homomer
asymmetric
5uwu EXPORTIN-1
MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 4
Homo sapiens
Saccharomyces cerevisiae
CRM1_C
IBN_N
Xpo1
VAL C 528
VAL C 529
ILE C 532
ILE D 141
None
heteromer
asymmetric
28282025
5x3t ANTITOXIN VAPB26
Mycobacterium tuberculosis
RHH_1VAL A  16
VAL A  30
ILE A  31
ILE C  35
None
heteromer
cyclic
28575388
5xe3 PROBABLE ANTITOXIN MAZE4
Mycobacterium tuberculosis
-VAL F 121
ILE F 146
VAL E 121
ILE E 146
None
heteromer
cyclic
28972145
5xrw FLIN
FLIY
Helicobacter pylori
FliMN_CILE A  57
ILE A  62
VAL C 214
VAL C 251
None
heteromer
asymmetric
-