PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1k28 TAIL-ASSOCIATED LYSOZYME
Escherichia virus T4
Gp5_C
Gp5_OB
Phage_lysozyme
GLY A 322
GLY A 459
GLY A 460
GLY E 452
None
heteromer
cyclic
11823865
1k6y INTEGRASE
Human immunodeficiency virus 1
-GLY B 189
GLY B 190
GLY B 193
GLY D 190
None
homomer
cyclic
11743009
1ocy BACTERIOPHAGE T4 SHORT TAIL FIBRE
Escherichia virus T4
Collar
S_tail_recep_bd
GLY A 397
GLY B 402
GLY B 404
GLY B 431
None
homomer
cyclic
12888344
1tdj BIOSYNTHETIC THREONINE DEAMINASE
Escherichia coli
PALP
Thr_dehydrat_C
GLY A 424
GLY A 425
GLY B 424
GLY B 425
None
homomer
cyclic
9562556
1ye9 CATALASE HPII
Escherichia coli
CatalaseGLY A 172
GLY A 174
GLY D 172
GLY D 174
None
heteromer
dihedral
15823018
2b3z RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD
Bacillus subtilis
RibD_C
dCMP_cyt_deam_1
GLY A 318
GLY A 319
GLY B 328
GLY B 330
None
homomer
dihedral
-
2buf ACETYLGLUTAMATE KINASE
Pseudomonas aeruginosa
AA_kinaseGLY A 105
GLY A 106
GLY B 105
GLY B 106
None
homomer
dihedral
16376937
2dv6 NITRITE REDUCTASE
Hyphomicrobium denitrificans
Cu-oxidase_3GLY A 228
GLY A 230
GLY A 231
GLY C 368
None
homomer
dihedral
17360521
2epl N-ACETYL-BETA-D-GLUCOSAMINIDASE
Streptococcus gordonii
Glyco_hydro_20GLY X 564
GLY X 565
GLY A 564
GLY A 565
None
homomer
cyclic
18237743
2hp3 IDS-EPIMERASE
Agrobacterium tumefaciens
MmgE_PrpDGLY A  57
GLY A  58
GLY B  57
GLY B  58
None
homomer
cyclic
16934291
2j91 ADENYLOSUCCINATE LYASE
Homo sapiens
ADSL_C
Lyase_1
GLY A   5
GLY A   8
GLY D   5
GLY D   8
None
homomer
dihedral
-
2nyt PROBABLE C->U-EDITING ENZYME APOBEC-2
Homo sapiens
APOBEC_NGLY A  37
GLY A  38
GLY B  37
GLY B  38
None
homomer
cyclic
17187054
2ovl PUTATIVE RACEMASE
Streptomyces coelicolor
MR_MLE_C
MR_MLE_N
GLY A  97
GLY A  98
GLY B  97
GLY B  98
None
homomer
cyclic
-
2wzv NFNB PROTEIN
Mycolicibacterium smegmatis
NitroreductaseGLY A 157
GLY A 160
GLY B 157
GLY B 160
None
homomer
cyclic
20624223
2ynm LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
Prochlorococcus marinus
Fer4_NifHGLY A  38
GLY A  39
GLY B  38
GLY B  39
ADP A1300
ADP B1299
AF3 A1299
AF3 B1298
heteromer
cyclic
23341615
2zoo PROBABLE NITRITE REDUCTASE
Pseudoalteromonas haloplanktis
Cu-oxidase
Cu-oxidase_3
Cytochrom_C
GLY A  93
GLY A  95
GLY A  96
GLY C 233
None
homomer
cyclic
-
3c8l FTSZ-LIKE PROTEIN OF UNKNOWN FUNCTION
Nostoc punctiforme
Lin0512_famGLY A  88
GLY A  89
GLY B  88
GLY B  89
GOL A 126
homomer
dihedral
-
3csw PUTATIVE BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE
Thermotoga maritima
Aminotran_4GLY A  28
GLY A 136
GLY B  28
GLY B 136
None
homomer
dihedral
-
3ea0 ATPASE, PARA FAMILY
Chlorobaculum tepidum
AAA_31GLY A  11
GLY A  12
GLY B  11
GLY B  12
ATP A 243
ATP B 243
homomer
cyclic
-
3fcy XYLAN ESTERASE 1
Thermoanaerobacterium saccharolyticum
AXE1GLY A 127
GLY A 128
GLY B 127
GLY B 128
None
homomer
dihedral
-
3fsd NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION IN NUTRIENT UPTAKE
Rhodospirillum rubrum
DUF4440GLY A  82
GLY A  85
GLY B  82
GLY B  85
None
homomer
cyclic
-
3ged SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR
Hungateiclostridium thermocellum
adh_short_C2GLY A 151
GLY A 152
GLY C 151
GLY C 152
None
homomer
dihedral
19774618
3itw PROTEIN TIOX
Micromonospora sp. ML1
GlyoxalaseGLY A  44
GLY A  45
GLY C  44
GLY C  45
None
homomer
cyclic
20122935
3r9i SEPTUM SITE-DETERMINING PROTEIN MIND
Escherichia coli
CbiAGLY A  12
GLY A  13
GLY B  12
GLY B  13
ADP A 261
ADP B 261
homomer
cyclic
21816275
3tsa NDP-RHAMNOSYLTRANSFERASE
Saccharopolyspora spinosa
DUF1205GLY A  45
GLY A  47
GLY B  45
GLY B  47
None
homomer
cyclic
22283226
3u0g PUTATIVE BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE ILVE
Burkholderia pseudomallei
Aminotran_4GLY A  34
GLY A 164
GLY B  34
GLY B 164
None
homomer
dihedral
-
3u35 GENERAL STRESS PROTEIN
Xanthomonas citri
Pyrid_ox_likeGLY A  96
GLY B  96
GLY C  96
GLY D  96
None
homomer
dihedral
22751670
3ug7 ARSENICAL PUMP-DRIVING ATPASE
Methanocaldococcus jannaschii
ArsA_ATPaseGLY A  35
GLY A  36
GLY B  35
GLY B  36
ADP A 401
ADP B 401
homomer
dihedral
22124326
3ziy COPPER-CONTAINING NITRITE REDUCTASE
Ralstonia pickettii
Cu-oxidase_3
Cytochrome_CBB3
GLY A 103
GLY A 105
GLY A 106
GLY C 243
None
homomer
cyclic
23535590
3zq6 PUTATIVE ARSENICAL PUMP-DRIVING ATPASE
Methanothermobacter thermautotrophicus
ArsA_ATPaseGLY A  23
GLY A  24
GLY B  23
GLY B  24
ADP A 401
ADP B 401
ALF A 402
ALF B 402
homomer
cyclic
21658170
3zqo TERMINASE SMALL SUBUNIT
Bacillus phage SF6
Terminase_2GLY A  92
GLY A  94
GLY A  96
GLY B  96
None
homomer
cyclic
22207627
3zs9 ATPASE GET3
Saccharomyces cerevisiae
ArsA_ATPaseGLY A  27
GLY A  28
GLY B  27
GLY B  28
ADP A 401
ADP B 401
ALF A 402
ALF B 402
heteromer
cyclic
21866104
4cr6 N-ACYLMANNOSAMINE 1-DEHYDROGENASE
Flavobacterium sp. 141-8
adh_short_C2GLY A 171
GLY A 172
GLY C 171
GLY C 172
None
homomer
dihedral
24969681
4fei HEAT SHOCK PROTEIN-RELATED PROTEIN
Deinococcus radiodurans
HSP20GLY A 129
GLY A 130
GLY B 129
GLY B 130
None
homomer
cyclic
23184973
4h0o ACETATE KINASE
Entamoeba histolytica
Acetate_kinaseGLY A 306
GLY A 307
GLY B 306
GLY B 307
None
homomer
cyclic
23159802
4hia LOV PROTEIN
Rhodobacter sphaeroides
PAS_9GLY A 134
GLY A 137
GLY B 134
GLY B 137
None
homomer
cyclic
23252338
4hr3 PUTATIVE ACYL-COA DEHYDROGENASE
Mycobacteroides abscessus
Acyl-CoA_dh_1
Acyl-CoA_dh_M
Acyl-CoA_dh_N
GLY A 304
GLY A 305
GLY C 304
GLY C 305
None
homomer
dihedral
25613812
4j8c HSC70-INTERACTING PROTEIN
Rattus norvegicus
HipNGLY A  39
GLY A  40
GLY B  39
GLY B  40
None
homomer
cyclic
23812373
4kem MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME
Azospirillum lipoferum
MR_MLE_CGLY A 103
GLY A 105
GLY B 103
GLY B 105
None
homomer
cyclic
-
4lij FAR UPSTREAM ELEMENT-BINDING PROTEIN 1
Homo sapiens
KH_1GLY A 116
GLY A 118
GLY A 119
GLY B 118
None
homomer
asymmetric
-
4nn1 TRANSCRIPTIONAL REGULATOR
Mycobacterium tuberculosis
TetR_NGLY A 152
GLY A 153
GLY B 152
GLY B 153
None
homomer
cyclic
24424575
4rmm PUTATIVE UNCHARACTERIZED PROTEIN
Chromobacterium violaceum
4HBTGLY A  67
GLY A  68
GLY B  67
GLY B  68
None
homomer
cyclic
-
4s36 PHAGE BASEPLATE PROTEIN
Pseudomonas aeruginosa
-GLY A 165
GLY B 169
GLY B 170
GLY B 171
None
homomer
cyclic
-
4w97 HTH-TYPE TRANSCRIPTIONAL REPRESSOR KSTR2
Mycobacterium tuberculosis
TetR_NGLY A 193
GLY A 194
GLY B 193
GLY B 194
None
homomer
cyclic
25406313
5aun ATPASE INVOLVED IN CHROMOSOME PARTITIONING, PARA/MIND FAMILY, MRP HOMOLOG
Thermococcus kodakarensis
ParAGLY B  29
GLY B  30
GLY D  29
GLY D  30
ADP B 301
ADP D 301
heteromer
cyclic
26056269
5ax6 COFB
Escherichia coli
-GLY A 281
GLY A 298
GLY A 300
GLY C 290
None
homomer
cyclic
26876601
5b5v MOB KINASE ACTIVATOR 1B
Mus musculus
Mob1_phoceinGLY A  37
GLY A  39
GLY C  37
GLY C  39
None
homomer
cyclic
27335147
5ce8 BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE
Thermoproteus uzoniensis
Aminotran_4GLY A  27
GLY A 153
GLY D  27
GLY D 153
None
homomer
dihedral
26872794
5fgl NICR
Pseudomonas putida
TetR_NGLY A 224
GLY A 225
GLY B 224
GLY B 225
None
homomer
cyclic
-
5h69 CHROMOSOME PARTITION PROTEIN SMC
Geobacillus stearothermophilus
SMC_hingeGLY A 568
GLY A 570
GLY B 663
GLY B 664
None
homomer
cyclic
28286005
5ies GERMLINE-TARGETING HIV-1 GP120 ENGINEERED OUTER DOMAIN EOD-GT8
VRC01CHUGL2 FAB HEAVY CHAIN
Homo sapiens
C1-set
GP120
V-set
GP120
GLY H  55
GLY H  56
GLY C 139
GLY C 140
None
heteromer
asymmetric
27013733
5j1j SITE-DETERMINING PROTEIN
Pseudomonas aeruginosa
ParAGLY A  20
GLY A  21
GLY B  20
GLY B  21
ANP A 301
ANP B 501
homomer
cyclic
28065505
5k5z PARA
Sulfolobus sp. NOB8H2
AAA_31GLY A  13
GLY A  14
GLY D  13
GLY D  14
ANP A 701
ANP D 701
homomer
cyclic
26339031
5ktl 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE
Trichormus variabilis
DHDPSGLY A 140
GLY A 143
GLY B 140
GLY B 143
None
homomer
dihedral
27845445
5tb7 NITRITE REDUCTASE
Neisseria gonorrhoeae
Cu-oxidase
Cu-oxidase_3
GLY A 143
GLY A 145
GLY A 146
GLY B 283
PO4 A 503
homomer
cyclic
28584144
5tjz 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE
Mycobacterium tuberculosis
DapB_C
DapB_N
GLY A 171
GLY A 174
GLY D 171
GLY D 174
None
homomer
dihedral
-
5xux CONSERVED PROTEIN
Methanosarcina mazei
RibD_CGLY A 184
GLY A 185
GLY B 194
GLY B 196
None
homomer
cyclic
29864427
5z2e DIHYDRODIPICOLINATE REDUCTASE
Paenisporosarcina sp. TG-14
DapB_C
DapB_N
GLY A 193
GLY A 196
GLY B 193
GLY B 196
None
homomer
dihedral
29786696