PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1fi2 OXALATE OXIDASE
Hordeum vulgare
Cupin_1ARG A 133
ASP B   4
ARG D 133
ASP E   4
None
homomer
dihedral
11062559
1fs2 SKP2
Homo sapiens
F-box-likeASP A 114
ARG A 138
ASP C 114
ARG C 138
None
heteromer
cyclic
11099048
1h65 CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34
Pisum sativum
AIG1ARG A 128
ASP A 130
ARG B 128
ASP B 130
None
homomer
cyclic
11753431
1hcf NEUROTROPHIN-4
Homo sapiens
NGFASP A  82
ARG A  84
ASP B  82
ARG B  84
SO4 B1130
heteromer
cyclic
11738045
1lxj HYPOTHETICAL 11.5KDA PROTEIN IN HTB2-NTH2 INTERGENIC REGION
Saccharomyces cerevisiae
Thiamine_BPASP A  78
ARG A  80
ASP B  78
ARG B  80
None
homomer
dihedral
12866058
1u69 HYPOTHETICAL PROTEIN
Pseudomonas aeruginosa
3-dmu-9_3-mtASP A  83
ARG A 121
ASP B  28
ARG B  55
None
homomer
cyclic
16493657
1v7z CREATININE AMIDOHYDROLASE
Pseudomonas sp.
CreatininaseARG A 136
ASP B  91
ASP C 101
ARG C 104
None
homomer
dihedral
15003455
1vdm PURINE PHOSPHORIBOSYLTRANSFERASE
Pyrococcus horikoshii
-ARG B 135
ASP F   2
ASP H   2
ARG J 135
None
homomer
dihedral
-
1w30 PYRR BIFUNCTIONAL PROTEIN
Mycobacterium tuberculosis
PribosyltranARG A 129
ASP A 133
ASP B 133
ARG B 136
None
homomer
dihedral
15805589
1yno BENZOYLFORMATE DECARBOXYLASE
Pseudomonas putida
TPP_enzyme_C
TPP_enzyme_M
TPP_enzyme_N
ARG A 184
ASP A 187
ARG C 184
ASP C 187
None
homomer
dihedral
-
2a67 ISOCHORISMATASE FAMILY PROTEIN
Enterococcus faecalis
IsochorismataseASP A 115
ARG A 119
ASP D 115
ARG D 119
None
homomer
cyclic
-
2gmq HYPOTHETICAL PROTEIN EF0006
Enterococcus faecalis
PrgUASP A  22
ARG A  43
ASP C  22
ARG C  43
None
homomer
dihedral
-
2hyd ABC TRANSPORTER HOMOLOG
Staphylococcus aureus
ABC_membrane
ABC_tran
ASP A 423
ARG A 474
ASP B 423
ARG B 474
None
homomer
cyclic
16943773
2j91 ADENYLOSUCCINATE LYASE
Homo sapiens
ADSL_C
Lyase_1
ARG A 371
ASP A 420
ARG C 371
ASP C 420
None
homomer
dihedral
-
2nuj THIOESTERASE SUPERFAMILY
Jannaschia
4HBT_2ASP A  30
ARG A  33
ASP B  30
ARG B  33
MPD B 164
homomer
dihedral
-
2v1o CYTOSOLIC ACYL COENZYME A THIOESTER HYDROLASE
Mus musculus
-ARG B  16
ARG B  19
ASP B  22
ASP E  21
None
homomer
dihedral
17563367
2vr0 CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA
Desulfovibrio vulgaris
Cytochrom_C552ASP A 343
ARG A 347
ASP D 343
ARG D 347
HEM C1004
HEM F1004
heteromer
cyclic
18597779
2x19 GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1
IMPORTIN-13
Homo sapiens
Saccharomyces cerevisiae
IBN_N
Ras
Xpo1
ASP A  79
ASP A 109
ARG A 112
ARG B 122
None
heteromer
asymmetric
20122403
2xua 3-OXOADIPATE ENOL-LACTONASE
Paraburkholderia xenovorans
Hydrolase_4ARG A  17
ASP A  19
ARG A  57
ASP H 176
None
homomer
cyclic
21237173
3bb6 UNCHARACTERIZED PROTEIN YEAR
Escherichia coli
DUF1971ARG A  42
ASP A  97
ARG C  42
ASP C  97
None
homomer
dihedral
-
3h2v RAVER-1
VINCULIN
Homo sapiens
RRM_1
Vinculin
ASP A 953
ASP E  69
ARG E 119
ARG E 121
None
heteromer
asymmetric
19523901
3h90 FERROUS-IRON EFFLUX PUMP FIEF
Escherichia coli
Cation_efflux
ZT_dimer
ASP A 207
ARG A 237
ASP C 207
ARG C 237
None
homomer
cyclic
19749753
3hq2 BACILLUS SUBTILIS M32 CARBOXYPEPTIDASE
Bacillus subtilis
Peptidase_M32ASP A 244
ARG A 246
ASP B  30
ARG B  43
None
homomer
cyclic
19544567
3luy PROBABLE CHORISMATE MUTASE
Bifidobacterium adolescentis
PDTASP A 224
ARG A 227
ASP B 224
ARG B 227
None
homomer
cyclic
-
3m2t PROBABLE DEHYDROGENASE
Chromobacterium violaceum
GFO_IDH_MocAARG A 210
ASP A 212
ARG C 210
ASP C 212
None
homomer
dihedral
-
3mi0 PROTEASOME SUBUNIT BETA
Mycobacterium tuberculosis
ProteasomeASP X 476
ASP X 477
ARG 2 329
ARG 2 488
DMF 2 112
DMF X 122
heteromer
dihedral
20461058
3npg UNCHARACTERIZED DUF364 FAMILY PROTEIN
Pyrococcus horikoshii
DUF364
DUF4213
ARG A 142
ASP A 154
ARG C 142
ASP C 154
None
homomer
dihedral
-
3obi FORMYLTETRAHYDROFOLATE DEFORMYLASE
Rhodopseudomonas palustris
-ARG C 108
ASP C 113
ASP D 257
ARG D 260
EDO C 317
homomer
dihedral
-
3tfi GCVT-LIKE AMINOMETHYLTRANSFERASE PROTEIN
Candidatus Pelagibacter ubique
GCV_T
GCV_T_C
ARG A  10
ASP B 252
ASP B 255
ARG B 322
None
homomer
cyclic
22162093
3wnw FERRITIN HEAVY CHAIN
Mus musculus
FerritinARG A  43
ASP A  44
ASP A  45
ARG S  79
None
homomer
octahedral
-
4d9s UVB-RESISTANCE PROTEIN UVR8
Arabidopsis thaliana
RCC1ARG A  41
ASP A  44
ASP A  77
ARG B 338
None
homomer
cyclic
22323738
4f4h GLUTAMINE DEPENDENT NAD+ SYNTHETASE
Burkholderia thailandensis
CN_hydrolase
NAD_synthase
ASP A 139
ARG A 549
ASP B 139
ARG B 549
None
homomer
cyclic
23382856
4hzd CYSE, SERINE ACETYLTRANSFERASE
Brucella abortus
Hexapep
SATase_N
ASP A  71
ARG A  74
ASP B  71
ARG B  74
 MG A 303
homomer
dihedral
25058332
4le6 ORGANOPHOSPHORUS HYDROLASE
Pseudomonas pseudoalcaligenes
Lactamase_BARG A 321
ASP A 323
ARG A 324
ASP B  56
EDO B 407
homomer
cyclic
24223749
4owp 26S PROTEASOME REGULATORY SUBUNIT RPN11
26S PROTEASOME REGULATORY SUBUNIT RPN8
Saccharomyces cerevisiae
JABASP A  20
ARG A  24
ASP B  67
ARG B 100
None
heteromer
asymmetric
-
4q1t GLUTAMATE 5-KINASE
Burkholderia thailandensis
AA_kinase
PUA
ASP A 111
ARG A 117
ASP C 111
ARG C 117
None
homomer
dihedral
-
4rku PHOTOSYSTEM I IRON-SULFUR CENTER
PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2
Pisum sativum
Fer4_21
PsaA_PsaB
ASP B 549
ASP B 560
ARG B 564
ARG C  66
None
heteromer
asymmetric
-
5eib DESIGNED ANKYRIN REPEAT PROTEIN
TUBULIN BETA-2B CHAIN
Bos taurus
synthetic construct
Ank_2
Ank_4
Tubulin
Tubulin_C
ARG D 400
ARG D 401
ASP E 110
ASP E 114
None
heteromer
asymmetric
27306797
5fif CARBOXYLASE
Deinococcus radiodurans
Carboxyl_transARG A 402
ASP A 534
ARG F 402
ASP F 534
None
homomer
dihedral
27396827
5h2t TREHALOSE SYNTHASE
Thermomonospora curvata
Alpha-amylase
Malt_amylase_C
ASP A 420
ARG A 421
ARG A 427
ASP E 420
None
homomer
dihedral
-
5j9t ENHANCER OF POLYCOMB-LIKE PROTEIN 1
HISTONE ACETYLTRANSFERASE ESA1
Saccharomyces cerevisiae
MOZ_SASARG E 245
ASP E 267
ASP E 269
ARG G 314
None
heteromer
asymmetric
27594449
5l0l UNCHARACTERIZED PROTEIN
Legionella pneumophila
-ARG A 125
ARG A 170
ASP A 174
ASP B 174
None
homomer
cyclic
-
5tw1 DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA
DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA
Mycolicibacterium smegmatis
RNA_pol_A_bac
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
ARG A  18
ARG A  20
ASP A 195
ASP C 988
None
heteromer
asymmetric
28067618
5vg3 OXALATE DECARBOXYLASE
Bacillus subtilis
Cupin_1ARG A  27
ASP A  54
ARG F  27
ASP F  54
None
homomer
dihedral
-
5wmh BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE
Arabidopsis thaliana
Aminotran_1_2ARG A  75
ASP A 204
ARG B  75
ASP B 204
None
homomer
cyclic
29405514
6b9r HYDROXYETHYLPHOSPHONATE DIOXYGENASE
Streptomyces albus
HTH_26ARG A  73
ASP A 215
ARG D  73
ASP D 215
None
homomer
cyclic
29217579
6bqc CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE
Escherichia coli
CMASASP A 309
ARG A 382
ASP B 309
ARG B 382
None
homomer
cyclic
30057024