PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1e2h THYMIDINE KINASE
Human alphaherpesvirus 1
Herpes_TKVAL A 134
ALA A 137
VAL A 138
ALA B 192
None
homomer
cyclic
11056041
1eex PROPANEDIOL DEHYDRATASE
Klebsiella oxytoca
Dehydratase_LU
Dehydratase_MU
VAL A 266
VAL A 305
ALA B 198
ALA B 201
None
heteromer
cyclic
10903944
1fs0 ATP SYNTHASE EPSILON SUBUNIT
ATP SYNTHASE GAMMA SUBUNIT
Escherichia coli
ATP-synt
ATP-synt_DE
ATP-synt_DE_N
ALA E 101
VAL G 133
VAL G 134
ALA G 135
None
heteromer
asymmetric
11062562
1fxk PREFOLDIN
PROTEIN (PREFOLDIN)
Methanothermobacter thermautotrophicus
Prefoldin
Prefoldin_2
ALA B  41
VAL C  80
ALA C  82
VAL C  84
None
heteromer
cyclic
11106732
1g3n CYCLIN-DEPENDENT KINASE 6
CYCLIN-DEPENDENT KINASE 6 INHIBITOR
Homo sapiens
Ank_4
Ank_5
Pkinase
VAL A  16
ALA A  17
ALA B  10
VAL B  44
None
heteromer
asymmetric
11124804
1h2s SENSORY RHODOPSIN II TRANSDUCER
Natronomonas pharaonis
-ALA B  60
VAL D  44
VAL D  56
ALA D  60
None
heteromer
cyclic
12368857
1h7n 5-AMINOLAEVULINIC ACID DEHYDRATASE
Saccharomyces cerevisiae
ALADALA A 298
ALA E 299
VAL E 304
VAL E 305
None
homomer
dihedral
11545591
1hw7 HEAT SHOCK PROTEIN HSP33
Escherichia coli
HSP33ALA A  18
VAL A  19
VAL A 176
ALA B 182
None
homomer
cyclic
11377197
1jdp ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR
Homo sapiens
ANF_receptorALA A  76
VAL B  72
VAL B  75
ALA B  76
None
homomer
cyclic
11533490
1k04 FOCAL ADHESION KINASE 1
Homo sapiens
Focal_ATALA A1028
ALA A1031
VAL B 932
VAL B 935
None
homomer
cyclic
12005431
1knz NONSTRUCTURAL RNA-BINDING PROTEIN 34
Rotavirus A
Rota_NSP3ALA A  21
ALA B  22
VAL B  23
VAL B  46
None
homomer
asymmetric
11792322
1ml8 HYPOTHETICAL PROTEIN (CRP REGION)
Escherichia coli
OsmCALA A  43
ALA A  44
VAL A 115
VAL B  40
None
homomer
cyclic
-
1oa8 ATAXIN-1
Homo sapiens
-VAL C 634
VAL C 641
ALA D 566
ALA D 567
None
homomer
asymmetric
14583607
1p7c THYMIDINE KINASE
Human alphaherpesvirus 1
Herpes_TKALA A 192
VAL B 134
ALA B 137
VAL B 138
None
homomer
cyclic
14527394
1pjq SIROHEME SYNTHASE
Salmonella enterica
CysG_dimeriser
NAD_binding_7
Sirohm_synth_M
TP_methylase
ALA A 125
VAL A 126
VAL B 124
ALA B 125
None
homomer
asymmetric
14595395
1tq8 HYPOTHETICAL PROTEIN RV1636
Mycobacterium tuberculosis
UspVAL A 112
ALA A 115
VAL B 145
ALA B 149
None
homomer
dihedral
-
1vdm PURINE PHOSPHORIBOSYLTRANSFERASE
Pyrococcus horikoshii
PribosyltranALA A  14
ALA A  17
VAL A 133
VAL C 149
None
homomer
dihedral
-
1wn2 PEPTIDYL-TRNA HYDROLASE
Pyrococcus horikoshii
PTH2ALA A  25
ALA A  26
VAL B  28
VAL B  59
None
homomer
cyclic
18391411
1xa3 CROTONOBETAINYL-COA:CARNITINE COA-TRANSFERASE
Escherichia coli
CoA_transf_3ALA A 146
VAL B 247
ALA B 320
VAL B 322
None
homomer
cyclic
15518548
2b33 PROTEIN SYNTHESIS INHIBITOR, PUTATIVE
Thermotoga maritima
Ribonuc_L-PSPALA A 107
VAL A 108
VAL B 108
ALA B 109
None
homomer
cyclic
-
2d69 RIBULOSE BISPHOSPHATE CARBOXYLASE
Pyrococcus horikoshii
RuBisCO_large
RuBisCO_large_N
VAL A 231
ALA A 260
VAL E 231
ALA E 260
None
homomer
dihedral
-
2e1m L-GLUTAMATE OXIDASE
Streptomyces sp. X-119-6
Amino_oxidaseVAL A  72
ALA A  73
VAL C 658
ALA C 661
None
heteromer
cyclic
19531050
2es4 LIPASE
LIPASE CHAPERONE
Burkholderia glumae
Abhydrolase_1
Lipase_chap
VAL A  72
ALA A  75
ALA D 236
VAL D 237
None
heteromer
asymmetric
16518399
2hza NICKEL-RESPONSIVE REGULATOR
Escherichia coli
-VAL B  83
ALA B  84
VAL D  83
ALA D  84
None
homomer
dihedral
16945905
2oxg SOXY PROTEIN
SOXZ PROTEIN
Paracoccus denitrificans
-ALA Z  68
VAL Z  69
ALA Y  51
VAL Y  59
None
heteromer
asymmetric
17522046
2p1m SKP1-LIKE PROTEIN 1A
TRANSPORT INHIBITOR RESPONSE 1 PROTEIN
Arabidopsis thaliana
F-box-like
Skp1_POZ
Skp1
ALA A 158
ALA B  55
VAL B  56
VAL B 562
None
heteromer
asymmetric
17410169
2p2u HOST-NUCLEASE INHIBITOR PROTEIN GAM, PUTATIVE
Desulfovibrio vulgaris
Phage_Mu_GamVAL A  11
ALA A  17
ALA A  20
VAL B  67
None
homomer
cyclic
-
2raf PUTATIVE DINUCLEOTIDE-BINDING OXIDOREDUCTASE
Lactobacillus plantarum
F420_oxidoredALA A 187
VAL A 189
VAL B 120
ALA B 187
None
homomer
cyclic
-
2wyl L-ASCORBATE-6-PHOSPHATE LACTONASE ULAG
Escherichia coli
Lactamase_B_3ALA A 128
ALA A 129
VAL A 156
VAL F   4
None
homomer
dihedral
20359483
2yiu CYTOCHROME B
CYTOCHROME C1, HEME PROTEIN
Paracoccus denitrificans
Cytochrom_B_C
Cytochrom_C1
Cytochrome_B
ALA A 257
VAL A 258
VAL A 261
ALA B 266
None
heteromer
cyclic
21996020
3aa1 23MER PEPTIDE FROM PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY O MEMBER 1
F-ACTIN-CAPPING PROTEIN SUBUNIT BETA ISOFORMS 1 AND 2
Gallus gallus
Homo sapiens
F_actin_cap_BALA B 129
VAL B 153
VAL B 154
ALA C 158
None
heteromer
asymmetric
20625546
3bij UNCHARACTERIZED PROTEIN GSU0716
Geobacter sulfurreducens
Peptidase_C14ALA A 144
VAL H 140
VAL H 141
ALA H 144
None
homomer
dihedral
-
3hw9 OUTER MEMBRANE PROTEIN F
Escherichia coli
Porin_1ALA A  17
VAL A  18
VAL A 337
ALA C  86
None
homomer
cyclic
19932117
3ibx PUTATIVE THIAMINASE II
Helicobacter pylori
TENA_THI-4ALA A  56
ALA B  56
VAL B  59
VAL B  60
None
homomer
dihedral
19780837
3igm PF14_0633 PROTEIN
Plasmodium falciparum
AP2VAL B  69
ALA B  80
ALA A 109
VAL A 110
None
homomer
cyclic
19913037
3lk3 F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-1
LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16A
Gallus gallus
Homo sapiens
CARMIL_C
F-actin_cap_A
ALA A 189
ALA A 190
VAL A 191
VAL T1034
None
heteromer
asymmetric
-
3s5o 4-HYDROXY-2-OXOGLUTARATE ALDOLASE, MITOCHONDRIAL
Homo sapiens
DHDPSVAL A 202
ALA A 229
VAL D 202
ALA D 229
None
homomer
dihedral
21998747
3so2 PUTATIVE UNCHARACTERIZED PROTEIN
Chlorella variabilis
dUTPaseALA A  70
VAL A  71
ALA C  79
VAL C  93
None
homomer
cyclic
22139176
3w99 HISTONE H3.1
HISTONE H4
Homo sapiens
CENP-T_C
Histone
ALA A  88
ALA A  91
VAL B  86
VAL B  87
None
heteromer
cyclic
24251097
4bkx HISTONE DEACETYLASE 1
METASTASIS-ASSOCIATED PROTEIN MTA1
Homo sapiens
ELM2
Hist_deacetyl
Myb_DNA-binding
ALA A 175
VAL B 157
VAL B 183
ALA B 186
None
heteromer
cyclic
23791785
4gft MYOSIN A TAIL DOMAIN INTERACTING PROTEIN
NANOBODY
Lama glama
Plasmodium falciparum
EF-hand_6
V-set
ALA A 183
ALA A 186
VAL B 102
VAL B 114
None
heteromer
asymmetric
23831371
4hsr GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE ALPHA CHAIN
GLUTARYL-7-AMINOCEPHALOSPORANIC ACID ACYLASE BETA CHAIN
Pseudomonas
Penicil_amidaseALA A 177
VAL A 180
VAL A 181
ALA B 356
None
heteromer
asymmetric
23373797
4i0k CD276 ANTIGEN
Mus musculus
Ig_3
V-set
VAL A  42
VAL B 138
ALA B 139
ALA B 140
None
homomer
cyclic
23583036
4ml9 UNCHARACTERIZED PROTEIN
Sebaldella termitidis
His_biosynthALA A 268
ALA A 269
VAL B 264
VAL B 265
None
homomer
cyclic
-
4nv1 FORMYLTRANSFERASE
Francisella tularensis
Formyl_trans_NVAL C 201
ALA C 206
VAL D 201
ALA D 206
None
homomer
cyclic
24347283
4oc8 RESTRICTION ENDONUCLEASE ASPBHI
Azoarcus sp. BH72
Mrr_catVAL A 154
ALA A 155
VAL B 154
ALA B 155
None
homomer
cyclic
24604015
4oel DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN
DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN
Homo sapiens
CathepsinC_exc
Peptidase_C1
Peptidase_C1
ALA A 238
ALA A 347
VAL A 348
VAL B 383
None
heteromer
cyclic
22928782
4pv2 L-ASPARAGINASE ALPHA SUBUNIT
L-ASPARAGINASE BETA SUBUNIT
Phaseolus vulgaris
Asparaginase_2ALA A  47
VAL A  51
VAL B 201
ALA B 209
None
heteromer
cyclic
25004963
4rfx DYNACTIN SUBUNIT 1
Gallus gallus
-VAL A 489
ALA A 492
VAL B 489
ALA B 492
None
homomer
asymmetric
-
4xiw CARBONIC ANHYDRASE, ALPHA TYPE
Chlamydomonas reinhardtii
Carb_anhydraseVAL A  80
ALA A  81
VAL G  80
ALA G  81
None
homomer
cyclic
25617045
5aww PROTEIN TRANSLOCASE SUBUNIT SECY
PUTATIVE PREPROTEIN TRANSLOCASE, SECG SUBUNIT
Thermus thermophilus
SecG
SecY
VAL Y 159
VAL Y 162
ALA Y 163
ALA G  16
None
heteromer
asymmetric
26586438
5c3l NUCLEOPORIN NUP58
NUP54
Xenopus laevis
Nucleoporin_FG2
Nup54
VAL A 414
VAL A 417
ALA B 356
ALA B 359
None
heteromer
asymmetric
26292704
5da9 PUTATIVE DOUBLE-STRAND BREAK PROTEIN
PUTATIVE UNCHARACTERIZED PROTEIN,PUTATIVE UNCHARACTERIZED PROTEIN
Chaetomium thermophilum
-ALA B1132
VAL B1133
ALA B1136
VAL D 445
None
heteromer
cyclic
26896444
5dqp EDTA MONOOXYGENASE
EDTA-degrading bacterium BNC1
Bac_luciferaseALA A  80
VAL A 112
VAL B  77
ALA B  80
None
homomer
cyclic
26928990
5ls7 ASPARTATE 1-DECARBOXYLASE
Escherichia coli
Asp_decarboxVAL A  15
ALA A  18
ALA D  79
VAL D  81
CSO D  78
heteromer
cyclic
28832133
5mx5 PROTEASOME ACTIVATOR COMPLEX SUBUNIT 1
PROTEASOME ACTIVATOR COMPLEX SUBUNIT 2
Mus musculus
PA28_alpha
PA28_beta
VAL B 194
VAL C 185
ALA C 186
ALA C 189
None
heteromer
asymmetric
28867616
5tvl FOLDASE PROTEIN PRSA
Streptococcus pneumoniae
Rotamase_2ALA A  28
VAL A  31
VAL D  22
ALA D  28
None
homomer
cyclic
-
5u9l PARALOG OF ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (PARC6)
Arabidopsis thaliana
DUF4101VAL A 746
ALA A 776
VAL B 746
ALA B 776
None
homomer
cyclic
-
5uni NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA 2
NAD(P) TRANSHYDROGENASE SUBUNIT BETA
Thermus thermophilus
PNTB
PNTB_4TM
VAL A  44
VAL A  47
ALA B  42
ALA B 229
None
heteromer
asymmetric
28648609
5x3x COBALT TRANSPORT PROTEIN CBIM
UNCHARACTERIZED PROTEIN CBIQ
Rhodobacter capsulatus
CbiM
CbiQ
VAL M  54
VAL Q 152
ALA Q 156
ALA Q 159
None
heteromer
asymmetric
28322252
5y5s PHOTOSYNTHETIC REACTION CENTER H SUBUNIT
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
Thermochromatium tepidum
PRC
PRCH
Photo_RC
VAL M 290
VAL M 291
ALA H  11
ALA H  12
LDA I 104
heteromer
asymmetric
29618814
6f5u ENVELOPE GLYCOPROTEIN
ENVELOPE GLYCOPROTEIN,ENVELOPE GLYCOPROTEIN,GP1
Zaire ebolavirus
Fibritin_C
Filo_glycop
VAL A 180
VAL A 181
ALA A 182
ALA B 562
None
heteromer
cyclic
29272110
6fij POLYKETIDE SYNTHASE
Cercospora nicotianae
Acyl_transf_1
Ketoacyl-synt_C
SAT
ketoacyl-synt
VAL A  45
VAL A 145
ALA A 146
ALA B 371
None
homomer
cyclic
29610486