PDBID Molecule/
Organism
Pfam Residues HETATM Symmetry Pubmed View
1cmb MET APO-REPRESSOR
Escherichia coli
MetJALA A  60
ALA A  64
ALA B  60
ALA B  64
None
homomer
cyclic
2677753
1khd ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
Pectobacterium carotovorum
Glycos_trans_3N
Glycos_transf_3
ALA A  49
ALA A  50
ALA D  49
ALA D  50
None
homomer
cyclic
12123839
1l7d NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE, SUBUNIT ALPHA 1
Rhodospirillum rubrum
AlaDh_PNT_C
AlaDh_PNT_N
ALA A 157
ALA B 443
ALA B 728
ALA B 729
None
homomer
cyclic
12379117
1nxm DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE
Streptococcus suis
dTDP_sugar_isomALA A  87
ALA A 137
ALA B  87
ALA B 137
None
homomer
cyclic
12791259
1ub3 ALDOLASE PROTEIN
Thermus thermophilus
DeoCALA A  78
ALA A  82
ALA B  78
ALA B  82
None
homomer
dihedral
15388928
1ukk OSMOTICALLY INDUCIBLE PROTEIN C
Thermus thermophilus
OsmCALA A   6
ALA B  51
ALA B  52
ALA B  55
None
homomer
cyclic
15111059
1vr6 PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
Thermotoga maritima
DAHP_synth_1ALA A 286
ALA A 289
ALA B 286
ALA B 289
None
homomer
dihedral
-
1vs1 3-DEOXY-7-PHOSPHOHEPTULONATE SYNTHASE
Aeropyrum pernix
DAHP_synth_1ALA A 230
ALA A 233
ALA D 230
ALA D 233
None
homomer
dihedral
-
1w85 PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT
Geobacillus stearothermophilus
Transket_pyr
Transketolase_C
ALA B 270
ALA B 274
ALA D 270
ALA D 274
None
heteromer
asymmetric
15514159
1yiz KYNURENINE AMINOTRANSFERASE
GLUTAMINE TRANSAMINASE
Aedes aegypti
Aminotran_1_2ALA A  60
ALA A  63
ALA B  60
ALA B  63
None
homomer
cyclic
15853804
2axt PHOTOSYSTEM II REACTION CENTER D2 PROTEIN
PHOTOSYSTEM Q(B) PROTEIN
Thermosynechococcus elongatus
Photo_RCALA A 146
ALA A 276
ALA D 212
ALA D 216
LHG A 567
PHO A 561
heteromer
cyclic
16355230
2b9c STRIATED-MUSCLE ALPHA TROPOMYOSIN
Rattus norvegicus
TropomyosinALA A 116
ALA A 119
ALA A 120
ALA B1120
None
homomer
asymmetric
16365313
2c7y 3-KETOACYL-COA THIOLASE 2
Arabidopsis thaliana
Thiolase_C
Thiolase_N
ALA A  41
ALA B 150
ALA B 151
ALA B 154
None
homomer
cyclic
16630629
2esn PROBABLE TRANSCRIPTIONAL REGULATOR
Pseudomonas aeruginosa
HTH_1
LysR_substrate
ALA A  78
ALA A  81
ALA D  78
ALA D  81
None
homomer
cyclic
-
2h6r TRIOSEPHOSPHATE ISOMERASE
Methanocaldococcus jannaschii
TIMALA A 126
ALA A 129
ALA C 126
ALA C 129
None
homomer
dihedral
17242514
2hhz PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-RELATED
Streptococcus suis
Putative_PNPOxALA A  19
ALA A  29
ALA B  19
ALA B  29
None
homomer
cyclic
-
2iz6 MOLYBDENUM COFACTOR CARRIER PROTEIN
Chlamydomonas reinhardtii
LDcluster4ALA A 114
ALA A 117
ALA B 114
ALA B 117
None
homomer
dihedral
16873364
2jae L-AMINO ACID OXIDASE
Rhodococcus opacus
Amino_oxidaseALA A 147
ALA A 152
ALA B 147
ALA B 152
None
homomer
cyclic
17234209
2np3 PUTATIVE TETR-FAMILY REGULATOR
Streptomyces coelicolor
TetR_NALA A 203
ALA A 206
ALA B 203
ALA B 206
None
homomer
cyclic
-
2nql ISOMERASE/LACTONIZING ENZYME
Agrobacterium fabrum
MR_MLE_C
MR_MLE_N
ALA A  77
ALA A  80
ALA B  77
ALA B  80
None
homomer
cyclic
-
2oxg SOXY PROTEIN
SOXZ PROTEIN
Paracoccus denitrificans
-ALA Z  79
ALA Y  67
ALA Y  68
ALA Y  69
None
heteromer
asymmetric
17522046
2p10 MLL9387 PROTEIN
Mesorhizobium japonicum
PEP_hydrolaseALA A 266
ALA A 269
ALA B 266
ALA B 269
None
homomer
dihedral
-
2p12 HYPOTHETICAL PROTEIN DUF402
Rhodococcus jostii
DUF402ALA A 152
ALA A 153
ALA B 152
ALA B 153
None
homomer
cyclic
-
2qkf 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8- PHOSPHATE SYNTHETASE
Neisseria meningitidis
DAHP_synth_1ALA A 224
ALA A 227
ALA B 224
ALA B 227
None
homomer
dihedral
-
2rag DIPEPTIDASE
Caulobacter vibrioides
Peptidase_M19ALA A 128
ALA A 129
ALA B 128
ALA B 129
None
homomer
cyclic
-
2zad MUCONATE CYCLOISOMERASE
Thermotoga maritima
MR_MLE_C
MR_MLE_N
ALA A  62
ALA A  65
ALA F  62
ALA F  65
None
homomer
dihedral
-
3cwq PARA FAMILY CHROMOSOME PARTITIONING PROTEIN
Synechocystis sp. PCC 6803
CbiAALA A  61
ALA A  62
ALA B  61
ALA B  62
None
homomer
cyclic
-
3dpi NAD+ SYNTHETASE
Burkholderia pseudomallei
NAD_synthaseALA A 117
ALA A 120
ALA B 117
ALA B 120
None
homomer
dihedral
-
3e0i 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
Aquifex aeolicus
DAHP_synth_1ALA A1210
ALA A1213
ALA D2210
ALA D2213
None
homomer
dihedral
19228070
3e10 PUTATIVE NADH OXIDASE
Clostridium acetobutylicum
NitroreductaseALA A  93
ALA A  94
ALA B  93
ALA B  94
None
homomer
cyclic
-
3ei9 LL-DIAMINOPIMELATE AMINOTRANSFERASE
Arabidopsis thaliana
Aminotran_1_2ALA A  79
ALA A  82
ALA B  79
ALA B  82
None
homomer
cyclic
18952095
3fa4 2,3-DIMETHYLMALATE LYASE
Aspergillus niger
PEP_mutaseALA A 247
ALA A 250
ALA B 247
ALA B 250
None
homomer
dihedral
19133276
3fiu NH(3)-DEPENDENT NAD(+) SYNTHETASE
Francisella tularensis
NAD_synthaseALA A  93
ALA A  96
ALA B  93
ALA B  96
None
homomer
cyclic
19204287
3fwy LIGHT-INDEPENDENT PROTOCHLOROPHYLLIDE REDUCTASE IRON-SULFUR ATP-BINDING PROTEIN
Rhodobacter sphaeroides
Fer4_NifHALA A 122
ALA B 192
ALA B 193
ALA B 196
None
homomer
cyclic
19006326
3hj9 OXIDOREDUCTASE
Cupriavidus pinatubonensis
NitroreductaseALA A 160
ALA A 161
ALA B 160
ALA B 161
FMN A 300
FMN B 300
homomer
cyclic
-
3hwc CHLOROPHENOL-4-MONOOXYGENASE COMPONENT 2
Burkholderia cepacia
HpaB
HpaB_N
ALA A3338
ALA A3342
ALA C1338
ALA C1342
None
homomer
dihedral
19915006
3jx9 PUTATIVE PHOSPHOHEPTOSE ISOMERASE
Exiguobacterium sibiricum
DUF2529ALA A 148
ALA A 151
ALA B 148
ALA B 151
None
homomer
cyclic
-
3kdw PUTATIVE SUGAR BINDING PROTEIN
Bacteroides vulgatus
DUF3826ALA A 102
ALA A 106
ALA B 102
ALA B 106
None
homomer
cyclic
-
3knb OBSCURIN-LIKE PROTEIN 1
TITIN
Homo sapiens
I-setALA A  10
ALA B  98
ALA B  99
ALA B 100
None
heteromer
asymmetric
20489725
3lye OXALOACETATE ACETYL HYDROLASE
Cryphonectria parasitica
PEP_mutaseALA A 315
ALA A 318
ALA C 315
ALA C 318
None
homomer
dihedral
20558740
3nvw XANTHINE DEHYDROGENASE/OXIDASE
Bos taurus
Ald_Xan_dh_C2
Ald_Xan_dh_C
Fer2
Fer2_2
ALA A 106
ALA C 582
ALA C 583
ALA C 586
None
heteromer
cyclic
24397336
3pde FARNESYL-DIPHOSPHATE SYNTHASE
Lactobacillus brevis
polyprenyl_syntALA A 137
ALA A 141
ALA B 137
ALA B 141
None
homomer
cyclic
23493556
3q4h PE FAMILY PROTEIN
Mycolicibacterium smegmatis
-ALA A  20
ALA A  23
ALA C  20
ALA C  23
None
heteromer
cyclic
24312350
3qgu LL-DIAMINOPIMELATE AMINOTRANSFERASE
Chlamydomonas reinhardtii
Aminotran_1_2ALA A  92
ALA A  95
ALA B  92
ALA B  95
None
homomer
cyclic
21633707
3qke MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME
Chromohalobacter salexigens
MR_MLE_C
MR_MLE_N
ALA A  44
ALA A  47
ALA B  44
ALA B  47
None
homomer
cyclic
-
3rim TRANSKETOLASE
Mycobacterium tuberculosis
Transket_pyr
Transketolase_C
Transketolase_N
ALA A 511
ALA A 514
ALA C 511
ALA C 514
None
homomer
cyclic
22645655
3s5o 4-HYDROXY-2-OXOGLUTARATE ALDOLASE, MITOCHONDRIAL
Homo sapiens
DHDPSALA A 229
ALA A 232
ALA D 229
ALA D 232
None
homomer
dihedral
21998747
3vqj CARBONYL SULFIDE HYDROLASE
Thiobacillus thioparus
Pro_CAALA A 143
ALA A 144
ALA B 143
ALA B 144
None
homomer
dihedral
23406161
3zg9 PENICILLIN-BINDING PROTEIN 4
Listeria monocytogenes
Transgly
Transpeptidase
ALA A 111
ALA B 226
ALA B 227
ALA B 230
None
heteromer
asymmetric
-
4beg PHOSPHATIDYLETHANOLAMINE BINDING PROTEIN
Mycobacterium tuberculosis
PBPALA A   9
ALA A  10
ALA C   9
ALA C  10
GOL C1177
homomer
cyclic
23907008
4c1k 2-DEHYDRO-3-DEOXYPHOSPHOHEPTONATE ALDOLASE
Pyrococcus furiosus
DAHP_synth_1ALA A 215
ALA A 218
ALA B 215
ALA B 218
None
homomer
dihedral
24239948
4ead THYMIDINE PHOSPHORYLASE
Escherichia coli
Glycos_trans_3N
Glycos_transf_3
PYNP_C
ALA A  40
ALA A  41
ALA B  40
ALA B  41
None
homomer
cyclic
-
4f0q RESTRICTION ENDONUCLEASE
Mycobacterium sp. JLS
Mrr_catALA A 371
ALA A 375
ALA D 371
ALA D 375
None
homomer
cyclic
22848107
4gbu NADPH DEHYDROGENASE 1
Saccharomyces pastorianus
Oxidored_FMNALA A 263
ALA A 266
ALA B 263
ALA B 266
None
homomer
cyclic
-
4giu ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
Mycobacterium tuberculosis
Glycos_trans_3N
Glycos_transf_3
ALA A  60
ALA A  63
ALA A  64
ALA B  63
None
homomer
cyclic
24623674
4hh3 TRANSCRIPTIONAL REGULATOR, PPSR
Rhodobacter sphaeroides
PAS_8ALA A  22
ALA A  23
ALA B  22
ALA B  23
None
heteromer
asymmetric
23728293
4izz TRANSCRIPTION FACTOR HETR
Fischerella thermalis
Peptidase_S48ALA A  24
ALA B  45
ALA B  46
ALA B  49
None
homomer
cyclic
23610410
4lfu REGULATORY PROTEIN SDIA
Escherichia coli
Autoind_bind
GerE
ALA A 235
ALA A 236
ALA B 235
ALA B 236
None
homomer
cyclic
24598739
4loc PYRUVATE CARBOXYLASE
Rhizobium etli
HMGL-like
PYC_OADA
ALA A 756
ALA A 757
ALA B 756
ALA B 757
None
homomer
dihedral
25157442
4lsb LYASE/MUTASE
Burkholderia cenocepacia
PEP_mutaseALA A 241
ALA A 244
ALA B 241
ALA B 244
None
homomer
cyclic
-
4mwa 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE
Bacillus anthracis
GcpEALA A 219
ALA A 220
ALA D 219
ALA D 220
None
homomer
cyclic
-
4p6k COMPUTATIONALLY DESIGNED TRANSPORTER OF ZN(II) AND PROTON
synthetic construct
-ALA A  12
ALA A  15
ALA B  12
ALA B  15
None
homomer
cyclic
25525248
4q16 NH(3)-DEPENDENT NAD(+) SYNTHETASE
Deinococcus radiodurans
NAD_synthaseALA A 119
ALA A 122
ALA B 119
ALA B 122
None
homomer
cyclic
-
4rg1 C9ORF114
Homo sapiens
Methyltrn_RNA_3ALA A 362
ALA A 363
ALA B 362
ALA B 363
None
homomer
cyclic
-
4uwm 3,6-DIKETOCAMPHANE 1,6 MONOOXYGENASE
Pseudomonas putida
Bac_luciferaseALA A  62
ALA A  63
ALA B  62
ALA B  63
None
homomer
cyclic
26527149
4yba REGULATORY PROTEIN C
Klebsiella pneumoniae
HTH_3ALA A  16
ALA A  19
ALA B  16
ALA B  19
None
homomer
cyclic
-
4ybn FLAVIN-NUCLEOTIDE-BINDING PROTEIN
Mycolicibacterium smegmatis
Pyridox_ox_2ALA A  39
ALA A  48
ALA B  39
ALA B  48
None
homomer
cyclic
26434506
5a2d BETAINE ALDEHYDE DEHYDROGENASE, CHLOROPLASTIC
Spinacia oleracea
AldedhALA A 245
ALA A 248
ALA B 245
ALA B 248
None
homomer
cyclic
26792760
5awe PUTATIVE ACETOIN UTILIZATION PROTEIN, ACETOIN DEHYDROGENASE
Thermus thermophilus
CBSALA A 155
ALA A 158
ALA D 155
ALA D 158
None
homomer
dihedral
26936147
5b0v MATRIX PROTEIN VP40
Marburg marburgvirus
VP40ALA A  97
ALA A 101
ALA B  97
ALA B 101
None
homomer
cyclic
26656687
5bnc HEME BINDING PROTEIN MSMEG_6519
Mycolicibacterium smegmatis
DUF2470
Pyrid_oxidase_2
ALA A  47
ALA A  57
ALA B  47
ALA B  57
None
homomer
cyclic
26434506
5dqp EDTA MONOOXYGENASE
EDTA-degrading bacterium BNC1
Bac_luciferaseALA A  80
ALA A  81
ALA B  80
ALA B  81
None
homomer
cyclic
26928990
5et3 FULLERENE ORGANIZING PROTEIN (C60SOL-COP-3)
synthetic construct
-ALA A  10
ALA A  13
ALA D  17
ALA D  20
60C A 101
homomer
dihedral
-
5exe OXALATE OXIDOREDUCTASE SUBUNIT ALPHA
OXALATE OXIDOREDUCTASE SUBUNIT BETA
Moorella thermoacetica
PFOR_II
POR_N
ALA A  69
ALA A  72
ALA A  74
ALA F  87
None
heteromer
cyclic
26712008
5fmn INRS
Synechocystis sp. PCC 6803
Trns_repr_metalALA A  86
ALA A  87
ALA D  86
ALA D  87
None
homomer
dihedral
28166209
5jie PROTEIN DELTA
Orsay virus
-ALA E  13
ALA E  16
ALA E  17
ALA A  11
None
homomer
cyclic
28241071
5m49 AMINOTRANSFERASE CLASS-III
Rhizobium freirei
Aminotran_3ALA A  48
ALA A  51
ALA A  52
ALA B  75
None
homomer
cyclic
-
5myp ALDEHYDE DEHYDROGENASE
Trypanosoma brucei
AldedhALA A 211
ALA A 214
ALA B 211
ALA B 214
None
homomer
cyclic
-
5odq HETERODISULFIDE REDUCTASE, SUBUNIT A
Methanothermococcus thermolithotrophicus
Fer4_9
Pyr_redox_2
ALA A 552
ALA A 556
ALA G 552
ALA G 556
None
heteromer
cyclic
28818947
5oi0 UNCHARACTERIZED PROTEIN
Mycolicibacterium hassiacum
-ALA A  13
ALA A  14
ALA C  13
ALA C  14
None
homomer
dihedral
31316802
5w4z RIBOFLAVIN LYASE
Herbiconiux
Bac_luciferaseALA A  94
ALA A  95
ALA B  94
ALA B  95
None
homomer
cyclic
-
5wgc DAUNORUBICIN-DOXORUBICIN POLYKETIDE SYNTHASE
Streptomyces peucetius
ACP_syn_III_CALA A 130
ALA A 134
ALA B 130
ALA B 134
None
homomer
cyclic
29620883
5z9y THIAZOLE SYNTHASE
Mycobacterium tuberculosis
ThiGALA A 190
ALA A 222
ALA B 229
ALA B 233
None
homomer
cyclic
29428731
6cbl NEAMINE TRANSAMINASE NEON
Streptomyces fradiae
Aminotran_3ALA A  65
ALA A  68
ALA B  65
ALA B  68
None
homomer
cyclic
29516565
6h00 PYRIDOXINE-5'-PHOSPHATE OXIDASE
Homo sapiens
PNP_phzG_C
Putative_PNPOx
ALA A  84
ALA A  94
ALA B  84
ALA B  94
None
homomer
cyclic
-