DRUG BINDING INTERFACES MAPPED TO 'DNA-DIRECTED RNA POLYMERASE BETA CHAIN'
List of Binding Interfaces
(Click on the entry ID to view details of interfaces and pattern clusters)
(Note that ASSAM search use only 3-12 residue containing patterns)
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Only hits with patterns containing 3-12 residues
DrReposER ID
PDB
Ligand
Organism
Macromolecule
Pfam
Res.
Interface
HETATM
1YNN_C_RFPC1120
1ynn
RFP
DB01045(Rifampicin)
Thermus aquaticus
DNA-DIRECTED RNAPOLYMERASE BETACHAIN
PF00562(RNA_pol_Rpb2_6)PF04560(RNA_pol_Rpb2_7)PF04561(RNA_pol_Rpb2_2)PF04563(RNA_pol_Rpb2_1)PF04565(RNA_pol_Rpb2_3)PF10385(RNA_pol_Rpb2_45)
12
ARG C 134GLN C 390GLN C 393PHE C 394ASP C 396ARG C 405HIS C 406ARG C 409SER C 411LEU C 413PRO C 444ILE C 452
RFP C1120
2A68_C_RBTC8001
2a68
RBT
DB00615(Rifabutin)
Thermusthermophilus
DNA-DIRECTED RNAPOLYMERASE BETACHAIN;RNA POLYMERASE SIGMAFACTOR RPOD
PF00140(Sigma70_r1_2)PF00562(RNA_pol_Rpb2_6)PF04539(Sigma70_r3)PF04542(Sigma70_r2)PF04545(Sigma70_r4)PF04560(RNA_pol_Rpb2_7)PF04561(RNA_pol_Rpb2_2)PF04563(RNA_pol_Rpb2_1)PF04565(RNA_pol_Rpb2_3)PF10385(RNA_pol_Rpb2_45)
11
ARG C 134ASP F 323GLN C 390GLN C 393PHE C 394ASP C 396HIS C 406ARG C 409SER C 411PRO C 444ILE C 452
RBT C8001
2A68_M_RBTM8002
2a68
RBT
DB00615(Rifabutin)
Thermusthermophilus
DNA-DIRECTED RNAPOLYMERASE BETACHAIN;RNA POLYMERASE SIGMAFACTOR RPOD
no annotation
13
ARG M 134ASP P 323LYS P 325GLN M 390GLN M 393PHE M 394ASP M 396HIS M 406ARG M 409SER M 411PRO M 444ILE M 452ASN M 563
RBT M8002
2A69_C_RPTC8001
2a69
RPT
DB01201(Rifapentine)
Thermusthermophilus
DNA-DIRECTED RNAPOLYMERASE BETACHAIN;RNA POLYMERASE SIGMAFACTOR RPOD
PF00140(Sigma70_r1_2)PF00562(RNA_pol_Rpb2_6)PF04539(Sigma70_r3)PF04542(Sigma70_r2)PF04545(Sigma70_r4)PF04560(RNA_pol_Rpb2_7)PF04561(RNA_pol_Rpb2_2)PF04563(RNA_pol_Rpb2_1)PF04565(RNA_pol_Rpb2_3)PF10385(RNA_pol_Rpb2_45)
11
ARG C 134ASP F 323GLN C 390GLN C 393PHE C 394ASP C 396HIS C 406ARG C 409SER C 411PRO C 444ILE C 452
RPT C8001
2A69_M_RPTM8002
2a69
RPT
DB01201(Rifapentine)
Thermusthermophilus
DNA-DIRECTED RNAPOLYMERASE BETACHAIN
no annotation
14
ARG M 134GLN M 390GLN M 393PHE M 394ASP M 396ARG M 405HIS M 406ARG M 409SER M 411PRO M 444ILE M 452ASN M 563MET M1000GLU M1002
RPT M8002
[["1YNN_C_RFPC1120","1ynn","RFP","DB01045(Rifampicin)","Thermus aquaticus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN","PF00562(RNA_pol_Rpb2_6);PF04560(RNA_pol_Rpb2_7);PF04561(RNA_pol_Rpb2_2);PF04563(RNA_pol_Rpb2_1);PF04565(RNA_pol_Rpb2_3);PF10385(RNA_pol_Rpb2_45)",12,"ARG C 134;GLN C 390;GLN C 393;PHE C 394;ASP C 396;ARG C 405;HIS C 406;ARG C 409;SER C 411;LEU C 413;PRO C 444;ILE C 452","RFP C1120\r"],["2A68_C_RBTC8001","2a68","RBT","DB00615(Rifabutin)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN;RNA POLYMERASE SIGMA FACTOR RPOD","PF00140(Sigma70_r1_2);PF00562(RNA_pol_Rpb2_6);PF04539(Sigma70_r3);PF04542(Sigma70_r2);PF04545(Sigma70_r4);PF04560(RNA_pol_Rpb2_7);PF04561(RNA_pol_Rpb2_2);PF04563(RNA_pol_Rpb2_1);PF04565(RNA_pol_Rpb2_3);PF10385(RNA_pol_Rpb2_45)",11,"ARG C 134;ASP F 323;GLN C 390;GLN C 393;PHE C 394;ASP C 396;HIS C 406;ARG C 409;SER C 411;PRO C 444;ILE C 452","RBT C8001\r"],["2A68_M_RBTM8002","2a68","RBT","DB00615(Rifabutin)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN;RNA POLYMERASE SIGMA FACTOR RPOD","no annotation",13,"ARG M 134;ASP P 323;LYS P 325;GLN M 390;GLN M 393;PHE M 394;ASP M 396;HIS M 406;ARG M 409;SER M 411;PRO M 444;ILE M 452;ASN M 563","RBT M8002\r"],["2A69_C_RPTC8001","2a69","RPT","DB01201(Rifapentine)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN;RNA POLYMERASE SIGMA FACTOR RPOD","PF00140(Sigma70_r1_2);PF00562(RNA_pol_Rpb2_6);PF04539(Sigma70_r3);PF04542(Sigma70_r2);PF04545(Sigma70_r4);PF04560(RNA_pol_Rpb2_7);PF04561(RNA_pol_Rpb2_2);PF04563(RNA_pol_Rpb2_1);PF04565(RNA_pol_Rpb2_3);PF10385(RNA_pol_Rpb2_45)",11,"ARG C 134;ASP F 323;GLN C 390;GLN C 393;PHE C 394;ASP C 396;HIS C 406;ARG C 409;SER C 411;PRO C 444;ILE C 452","RPT C8001\r"],["2A69_M_RPTM8002","2a69","RPT","DB01201(Rifapentine)","Thermus thermophilus","DNA-DIRECTED RNA POLYMERASE BETA CHAIN","no annotation",14,"ARG M 134;GLN M 390;GLN M 393;PHE M 394;ASP M 396;ARG M 405;HIS M 406;ARG M 409;SER M 411;PRO M 444;ILE M 452;ASN M 563;MET M1000;GLU M1002","RPT M8002\r"]]