SIMILAR PATTERNS OF AMINO ACIDS FOR 6NMF_B_CHDB303

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vn3 ANTIFREEZE PROTEIN

(Typhula
ishikariensis) 		PF11999
(DUF3494) 		5 TRP A 142
THR A 139
THR A 137
ARG A  97
GLY A 118
 None
 1.37A 6nmfA-3vn3A:
undetectable
6nmfB-3vn3A:
0.0
6nmfT-3vn3A:
0.0		 6nmfA-3vn3A:
18.09
6nmfB-3vn3A:
22.58
6nmfT-3vn3A:
17.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b5h ANTIFREEZE PROTEIN

(Typhula
ishikariensis) 		PF11999
(DUF3494) 		5 TRP A 142
THR A 139
THR A 137
ARG A  97
GLY A 118
 None
 1.34A 6nmfA-5b5hA:
undetectable
6nmfB-5b5hA:
0.0
6nmfT-5b5hA:
0.0		 6nmfA-5b5hA:
21.27
6nmfB-5b5hA:
23.11
6nmfT-5b5hA:
12.56