SIMILAR PATTERNS OF AMINO ACIDS FOR 6GNE_A_ACRA602_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1arl APO-CARBOXYPEPTIDASE
A=ALPHA= (COX)

(Bos taurus) 		PF00246
(Peptidase_M14) 		4 TRP A  73
HIS A  69
ASN A 112
GLU A 173
 None
 1.25A 6gneA-1arlA:
3.5		 6gneA-1arlA:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1aye PROCARBOXYPEPTIDASE
A2

(Homo sapiens) 		PF00246
(Peptidase_M14)
PF02244
(Propep_M14) 		4 TRP A  73
HIS A  69
ASN A 112
GLU A 173
 None
ZN  A 400 (-3.2A)
None
None
 1.25A 6gneA-1ayeA:
2.8		 6gneA-1ayeA:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1i2m REGULATOR OF
CHROMOSOME
CONDENSATION 1

(Homo sapiens) 		PF00415
(RCC1) 		4 TYR B 358
HIS B 410
ASN B 374
GLU B  56
 None
 1.43A 6gneA-1i2mB:
undetectable		 6gneA-1i2mB:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jji CARBOXYLESTERASE

(Archaeoglobus
fulgidus) 		PF07859
(Abhydrolase_3) 		4 TYR A  10
HIS A 285
TYR A 254
GLU A 262
 None
EPE  A 455 (-4.6A)
None
None
 1.38A 6gneA-1jjiA:
5.3		 6gneA-1jjiA:
19.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lqk PROBABLE FOSFOMYCIN
RESISTANCE PROTEIN

(Pseudomonas
aeruginosa) 		PF00903
(Glyoxalase) 		4 TYR A  62
ASN A  92
TYR A 100
GLU A  95
 None
K  A 701 (-3.1A)
PO4  A 501 ( 4.1A)
None
 1.31A 6gneA-1lqkA:
undetectable		 6gneA-1lqkA:
17.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fja ADENYLYLSULFATE
REDUCTASE, SUBUNIT A

(Archaeoglobus
fulgidus) 		PF00890
(FAD_binding_2)
PF02910
(Succ_DH_flav_C) 		4 TRP A 596
HIS A 319
ASN A 318
TYR A 599
 None
 1.39A 6gneA-2fjaA:
2.4		 6gneA-2fjaA:
23.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fjc ANTIGEN TPF1

(Treponema
pallidum) 		PF00210
(Ferritin) 		4 HIS A  54
ASN A  55
TYR A  56
GLU A 112
 None
 1.36A 6gneA-2fjcA:
undetectable		 6gneA-2fjcA:
15.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g6y GREEN FLUORESCENT
PROTEIN 2

(Pontellina
plumata) 		PF01353
(GFP) 		4 HIS A 173
ASN A  85
TYR A  83
GLU A 140
 None
 1.45A 6gneA-2g6yA:
undetectable		 6gneA-2g6yA:
17.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hk0 D-PSICOSE
3-EPIMERASE

(Agrobacterium
tumefaciens) 		PF01261
(AP_endonuc_2) 		4 TRP A 112
HIS A 186
ASN A 157
GLU A 165
 TRP  A 112 ( 0.5A)
HIS  A 186 ( 1.0A)
ASN  A 157 ( 0.6A)
GLU  A 165 ( 0.6A)
 1.42A 6gneA-2hk0A:
undetectable		 6gneA-2hk0A:
23.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2k8e UPF0339 PROTEIN YEGP

(Escherichia
coli) 		PF07411
(DUF1508) 		4 TYR A 100
ASN A  85
TYR A  83
GLU A  47
 None
 1.23A 6gneA-2k8eA:
undetectable		 6gneA-2k8eA:
15.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qg7 ETHANOLAMINE KINASE
PV091845

(Plasmodium
vivax) 		PF01633
(Choline_kinase) 		4 TRP A 421
HIS A 367
ASN A 369
GLU A 387
 None
 1.38A 6gneA-2qg7A:
undetectable		 6gneA-2qg7A:
20.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w5s PROCESSED GLYCEROL
PHOSPHATE
LIPOTEICHOIC ACID
SYNTHASE

(Staphylococcus
aureus) 		PF00884
(Sulfatase) 		4 TYR A 477
HIS A 416
ASN A 415
TYR A 441
 None
GP9  A1644 (-4.0A)
None
None
 1.37A 6gneA-2w5sA:
2.1		 6gneA-2w5sA:
21.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a5r BENZALACETONE
SYNTHASE

(Rheum palmatum) 		PF00195
(Chal_sti_synt_N)
PF02797
(Chal_sti_synt_C) 		4 TYR A  24
ASN A  19
TYR A  62
GLU A 101
 None
 1.43A 6gneA-3a5rA:
undetectable		 6gneA-3a5rA:
22.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3b1e BETAC-S LYASE

(Streptococcus
anginosus) 		PF00155
(Aminotran_1_2) 		4 TYR A 164
HIS A 170
ASN A 168
GLU A 178
 None
 1.46A 6gneA-3b1eA:
undetectable		 6gneA-3b1eA:
22.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ing HOMOSERINE
DEHYDROGENASE

(Thermoplasma
acidophilum) 		PF00742
(Homoserine_dh)
PF03447
(NAD_binding_3) 		4 TYR A 302
ASN A  17
TYR A 306
GLU A  61
 None
 1.49A 6gneA-3ingA:
3.3		 6gneA-3ingA:
22.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3j26 CAPSID PROTEIN V20

(Mimivirus-dependent
virus Sputnik) 		no annotation 4 TYR A 327
HIS A 134
ASN A 386
TYR A 385
 None
 1.47A 6gneA-3j26A:
undetectable		 6gneA-3j26A:
20.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l01 GLGA GLYCOGEN
SYNTHASE

(Pyrococcus
abyssi) 		PF00534
(Glycos_transf_1)
PF08323
(Glyco_transf_5) 		4 TYR A  89
TRP A 129
HIS A 151
GLU A 339
 GOL  A6500 ( 3.9A)
GOL  A6502 (-4.3A)
None
K  A5600 (-4.0A)
 0.53A 6gneA-3l01A:
35.2		 6gneA-3l01A:
27.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3poc ALPHA-GLUCOSIDASE

(Blautia obeum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		4 TYR A  85
TRP A 417
HIS A 427
ASN A 431
 None
ACR  A 664 (-4.6A)
None
None
 1.33A 6gneA-3pocA:
undetectable		 6gneA-3pocA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rht (GATASE1)-LIKE
PROTEIN

(Planctopirus
limnophila) 		PF07090
(GATase1_like) 		4 TRP A  95
HIS A  89
ASN A 152
TYR A  88
 None
 1.44A 6gneA-3rhtA:
2.6		 6gneA-3rhtA:
19.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rim TRANSKETOLASE

(Mycobacterium
tuberculosis) 		PF00456
(Transketolase_N)
PF02779
(Transket_pyr)
PF02780
(Transketolase_C) 		4 TYR A 571
ASN A 527
TYR A 531
GLU A 369
 None
 1.17A 6gneA-3rimA:
2.8		 6gneA-3rimA:
23.01
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3vue GRANULE-BOUND STARCH
SYNTHASE 1,
CHLOROPLASTIC/AMYLOP
LASTIC

(Oryza sativa) 		PF00534
(Glycos_transf_1)
PF08323
(Glyco_transf_5) 		5 TRP A 235
HIS A 264
ASN A 265
TYR A 268
GLU A 485
 SO4  A 701 ( 4.8A)
None
SO4  A 704 ( 4.2A)
SO4  A 701 (-4.8A)
None
 0.80A 6gneA-3vueA:
41.5		 6gneA-3vueA:
31.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fye SIDF, INHIBITOR OF
GROWTH FAMILY,
MEMBER 3

(Legionella
pneumophila) 		no annotation 4 TYR A 612
HIS A 549
ASN A 438
GLU A 547
 None
 1.35A 6gneA-4fyeA:
undetectable		 6gneA-4fyeA:
19.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pw8 TRYPTOPHAN
2,3-DIOXYGENASE

(Homo sapiens) 		PF03301
(Trp_dioxygenase) 		4 HIS A 328
ASN A 327
TYR A 326
GLU A 133
 None
 1.00A 6gneA-4pw8A:
undetectable		 6gneA-4pw8A:
21.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ro1 DIS3-LIKE
EXONUCLEASE 2

(Schizosaccharomyces
pombe) 		no annotation 4 HIS B 803
ASN B 805
TYR B 740
GLU B 809
 None
 1.48A 6gneA-4ro1B:
undetectable		 6gneA-4ro1B:
20.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uek GALACTITOL-1-PHOSPHA
TE 5-DEHYDROGENASE

(Escherichia
coli) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 TYR A 106
ASN A 289
TYR A 290
GLU A  60
 None
TRS  A1350 ( 4.5A)
None
ZN  A1347 ( 4.6A)
 1.43A 6gneA-4uekA:
3.6		 6gneA-4uekA:
21.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uq9 CARBOHYDRATE BINDING
FAMILY 6

(Ruminiclostridium
thermocellum) 		PF17189
(Glyco_hydro_30C) 		4 HIS A 250
ASN A 248
TYR A 261
GLU A 244
 None
 1.46A 6gneA-4uq9A:
undetectable		 6gneA-4uq9A:
21.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uq9 CARBOHYDRATE BINDING
FAMILY 6

(Ruminiclostridium
thermocellum) 		PF17189
(Glyco_hydro_30C) 		4 TYR A 289
HIS A 247
ASN A 248
TYR A 261
 None
 1.31A 6gneA-4uq9A:
undetectable		 6gneA-4uq9A:
21.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4x04 SOLUTE BINDING
PROTEIN

(Citrobacter
koseri) 		PF03480
(DctP) 		4 TYR A 223
ASN A 154
TYR A 230
GLU A 115
 None
 1.26A 6gneA-4x04A:
undetectable		 6gneA-4x04A:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cay ENVELOPE
GLYCOPROTEIN GP120
CORE FROM ST STRAIN
OF HIV-2

(Human
immunodeficiency
virus 2) 		PF00516
(GP120) 		4 TRP G 343
HIS G 433
ASN G 404
GLU G 383
 None
None
NAG  G 608 (-1.9A)
NAG  G 608 (-3.2A)
 1.41A 6gneA-5cayG:
undetectable		 6gneA-5cayG:
20.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ei3 EUKARYOTIC
TRANSLATION
INITIATION FACTOR 4E

(Homo sapiens) 		PF01652
(IF4E) 		4 TYR A  91
HIS A  78
ASN A  77
TYR A  76
 None
 1.33A 6gneA-5ei3A:
undetectable		 6gneA-5ei3A:
17.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5g0q BETA-GLUCURONIDASE

(Acidobacterium
capsulatum) 		PF03662
(Glyco_hydro_79n) 		4 TYR A 334
HIS A 241
TYR A 292
GLU A 268
 IF6  A1476 (-4.4A)
None
IF6  A1476 (-4.0A)
None
 1.27A 6gneA-5g0qA:
undetectable		 6gneA-5g0qA:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k52 ALDEHYDE
DECARBONYLASE

(Limnothrix sp.
KNUA012) 		PF11266
(Ald_deCOase) 		4 TYR A 122
HIS A 147
TYR A 145
GLU A 152
 None
 1.27A 6gneA-5k52A:
undetectable		 6gneA-5k52A:
20.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w6t HEMAGGLUTININ

(Influenza A
virus) 		PF00509
(Hemagglutinin) 		4 TRP A 153
HIS A 130
ASN A 131
GLU A 158
 None
 1.35A 6gneA-5w6tA:
undetectable		 6gneA-5w6tA:
19.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w8q BIS3 BIPHENYL
SYNTHASE

(Malus domestica) 		no annotation 4 TYR A  26
ASN A  21
TYR A  64
GLU A 103
 None
 1.42A 6gneA-5w8qA:
undetectable		 6gneA-5w8qA:
10.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6gnf -

(-) 		no annotation 5 TYR A 101
TRP A 152
HIS A 181
ASN A 182
GLU A 414
 QPS  A 602 (-3.9A)
SO4  A 606 ( 3.3A)
QPS  A 602 (-4.1A)
QPS  A 602 (-4.4A)
QPS  A 602 (-3.6A)
 0.61A 6gneA-6gnfA:
42.1		 6gneA-6gnfA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6gng -

(-) 		no annotation 6 TYR A 120
TRP A 170
HIS A 199
ASN A 200
TYR A 203
GLU A 434
 QPS  A 601 (-4.4A)
QPS  A 601 (-4.2A)
QPS  A 601 (-4.4A)
QPS  A 601 (-4.2A)
QPS  A 601 (-3.9A)
QPS  A 601 ( 3.7A)
 0.57A 6gneA-6gngA:
42.2		 6gneA-6gngA:
undetectable