SIMILAR PATTERNS OF AMINO ACIDS FOR 6GMD_A_ACTA401_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cf5 PROTEIN
(BETA-MOMORCHARIN)

(Momordica
charantia) 		PF00161
(RIP) 		4 ARG A 161
LEU A 237
ASN A  68
VAL A  69
 None
 1.50A 6gmdA-1cf5A:
undetectable		 6gmdA-1cf5A:
20.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cm8 PHOSPHORYLATED MAP
KINASE P38-GAMMA

(Homo sapiens) 		PF00069
(Pkinase) 		4 ARG A  73
ARG A 152
LEU A 174
VAL A 186
 TPO  A 183 ( 2.8A)
TPO  A 183 ( 2.8A)
None
PTR  A 185 ( 2.8A)
 1.00A 6gmdA-1cm8A:
29.8		 6gmdA-1cm8A:
28.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1e32 P97

(Mus musculus) 		PF00004
(AAA)
PF02359
(CDC48_N)
PF02933
(CDC48_2) 		4 ARG A 155
LEU A 198
ASN A  85
VAL A  87
 None
 1.34A 6gmdA-1e32A:
undetectable		 6gmdA-1e32A:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ecg GLUTAMINE
PHOSPHORIBOSYLPYROPH
OSPHATE
AMIDOTRANSFERASE

(Escherichia
coli) 		PF00156
(Pribosyltran)
PF13522
(GATase_6) 		4 ARG A 482
LEU A 478
ASN A 403
VAL A 404
 None
 1.44A 6gmdA-1ecgA:
undetectable		 6gmdA-1ecgA:
21.84
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1m2p CASEIN KINASE II,
ALPHA CHAIN

(Zea mays) 		PF00069
(Pkinase) 		5 ARG A  80
ARG A 155
LEU A 178
ASN A 189
VAL A 192
 None
 0.15A 6gmdA-1m2pA:
42.0		 6gmdA-1m2pA:
77.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1o7d LYSOSOMAL
ALPHA-MANNOSIDASE

(Bos taurus) 		PF07748
(Glyco_hydro_38C) 		4 ARG D 805
LEU D 804
ASN D 667
VAL D 771
 None
 1.29A 6gmdA-1o7dD:
undetectable		 6gmdA-1o7dD:
20.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2iuk SEED LIPOXYGENASE

(Glycine max) 		PF00305
(Lipoxygenase)
PF01477
(PLAT) 		4 ARG A 372
LEU A 840
ASN A 732
VAL A 356
 None
 1.43A 6gmdA-2iukA:
0.0		 6gmdA-2iukA:
17.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jgd 2-OXOGLUTARATE
DEHYDROGENASE E1
COMPONENT

(Escherichia
coli) 		PF00676
(E1_dh)
PF02779
(Transket_pyr)
PF16870
(OxoGdeHyase_C) 		4 ARG A 900
ARG A 816
ASN A 931
VAL A 932
 None
 1.23A 6gmdA-2jgdA:
undetectable		 6gmdA-2jgdA:
17.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2q 6-AMINOHEXANOATE-CYC
LIC-DIMER HYDROLASE

(Arthrobacter
sp. KI72) 		PF01425
(Amidase) 		4 ARG A 191
ARG A 367
LEU A 366
VAL A 363
 None
 1.34A 6gmdA-3a2qA:
undetectable		 6gmdA-3a2qA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ba0 MACROPHAGE
METALLOELASTASE

(Homo sapiens) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10) 		4 ARG A 249
LEU A 250
ASN A 143
VAL A 140
 None
 1.44A 6gmdA-3ba0A:
2.3		 6gmdA-3ba0A:
19.71
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3e3b CASEIN KINASE II
SUBUNIT ALPHA'

(Homo sapiens) 		PF00069
(Pkinase) 		5 ARG X  81
ARG X 156
LEU X 179
ASN X 190
VAL X 193
 None
 0.77A 6gmdA-3e3bX:
46.7		 6gmdA-3e3bX:
80.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mdy BONE MORPHOGENETIC
PROTEIN RECEPTOR
TYPE-1B

(Homo sapiens) 		PF07714
(Pkinase_Tyr)
PF08515
(TGF_beta_GS) 		4 ARG A 243
LEU A 353
ASN A 369
VAL A 372
 None
 1.27A 6gmdA-3mdyA:
23.5		 6gmdA-3mdyA:
25.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mdy BONE MORPHOGENETIC
PROTEIN RECEPTOR
TYPE-1B

(Homo sapiens) 		PF07714
(Pkinase_Tyr)
PF08515
(TGF_beta_GS) 		4 ARG A 331
LEU A 353
ASN A 369
VAL A 372
 None
 1.06A 6gmdA-3mdyA:
23.5		 6gmdA-3mdyA:
25.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nz4 PHENYLALANINE
AMMONIA-LYASE

(Taxus
canadensis) 		PF00221
(Lyase_aromatic) 		4 ARG A 130
LEU A  43
ASN A 160
VAL A  51
 None
 1.33A 6gmdA-3nz4A:
undetectable		 6gmdA-3nz4A:
18.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zfv CRISPR-ASSOCIATED
ENDORIBONUCLEASE
CAS6 1

(Sulfolobus
solfataricus) 		PF10040
(CRISPR_Cas6) 		4 ARG A 269
LEU A 263
ASN A 186
VAL A 183
 None
 1.49A 6gmdA-3zfvA:
undetectable		 6gmdA-3zfvA:
21.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cj0 ENDOGLUCANASE D

(Ruminiclostridium
thermocellum) 		PF00759
(Glyco_hydro_9)
PF02927
(CelD_N) 		4 ARG A 449
LEU A 451
ASN A 460
VAL A 463
 None
 1.46A 6gmdA-4cj0A:
undetectable		 6gmdA-4cj0A:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fzw 2,3-DEHYDROADIPYL-CO
A HYDRATASE

(Escherichia
coli) 		PF00378
(ECH_1) 		4 ARG A  87
LEU A  84
ASN A  36
VAL A  35
 None
 1.38A 6gmdA-4fzwA:
undetectable		 6gmdA-4fzwA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hwc BAG FAMILY MOLECULAR
CHAPERONE REGULATOR
1

(Arabidopsis
thaliana) 		PF02179
(BAG) 		4 ARG A 170
ARG A 174
LEU A 171
VAL A 196
 None
 1.21A 6gmdA-4hwcA:
undetectable		 6gmdA-4hwcA:
14.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hwi BAG FAMILY MOLECULAR
CHAPERONE REGULATOR
1

(Arabidopsis
thaliana) 		PF02179
(BAG)
PF14560
(Ubiquitin_2) 		4 ARG B 170
ARG B 174
LEU B 171
VAL B 196
 None
 1.30A 6gmdA-4hwiB:
undetectable		 6gmdA-4hwiB:
19.32
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4jr7 CASEIN KINASE II
SUBUNIT ALPHA

(Saccharomyces
cerevisiae) 		PF00069
(Pkinase) 		5 ARG A  81
ARG A 194
LEU A 217
ASN A 228
VAL A 231
 None
 0.29A 6gmdA-4jr7A:
45.4		 6gmdA-4jr7A:
54.55
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4md8 CASEIN KINASE II
SUBUNIT ALPHA

(Homo sapiens) 		PF00069
(Pkinase) 		5 ARG E  80
ARG E 155
LEU E 178
ASN E 189
VAL E 192
 None
 0.43A 6gmdA-4md8E:
50.5		 6gmdA-4md8E:
93.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ng3 5-CARBOXYVANILLATE
DECARBOXYLASE

(Sphingomonas
paucimobilis) 		PF04909
(Amidohydro_2) 		4 ARG A 310
LEU A   3
ASN A  66
VAL A 306
 None
 1.44A 6gmdA-4ng3A:
undetectable		 6gmdA-4ng3A:
21.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o2h PROTEIN BCAM1869

(Burkholderia
cenocepacia) 		PF16245
(DUF4902) 		4 ARG A  62
LEU A  20
ASN A  96
VAL A  97
 None
 1.49A 6gmdA-4o2hA:
undetectable		 6gmdA-4o2hA:
17.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pc9 C4-DICARBOXYLATE
TRANSPORT SYSTEM,
SUBSTRATE-BINDING
PROTEIN, PUTATIVE

(Roseobacter
denitrificans) 		PF03480
(DctP) 		4 ARG A 316
LEU A 308
ASN A 310
VAL A 307
 None
 1.41A 6gmdA-4pc9A:
undetectable		 6gmdA-4pc9A:
20.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4q7g LEUCOTOXIN LUKDV

(Staphylococcus
aureus) 		PF07968
(Leukocidin) 		4 ARG A 273
LEU A  56
ASN A 296
VAL A 298
 None
 1.29A 6gmdA-4q7gA:
0.9		 6gmdA-4q7gA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5c1b TRANSITIONAL
ENDOPLASMIC
RETICULUM ATPASE

(Homo sapiens) 		PF00004
(AAA)
PF02359
(CDC48_N)
PF02933
(CDC48_2)
PF09336
(Vps4_C) 		4 ARG A 155
LEU A 198
ASN A  85
VAL A  87
 None
 1.46A 6gmdA-5c1bA:
undetectable		 6gmdA-5c1bA:
18.39
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5mov CASEIN KINASE II
SUBUNIT ALPHA

(Homo sapiens) 		PF00069
(Pkinase) 		5 ARG A  80
ARG A 155
LEU A 178
ASN A 189
VAL A 192
 None
 0.11A 6gmdA-5movA:
50.7		 6gmdA-5movA:
92.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xnz CRED

(Streptomyces
cremeus) 		no annotation 4 ARG A 152
LEU A 267
ASN A 368
VAL A 272
 None
 1.48A 6gmdA-5xnzA:
undetectable		 6gmdA-5xnzA:
undetectable
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xvu CASEIN KINASE 2,
ALPHA SUBUNIT

(Plasmodium
falciparum) 		PF00069
(Pkinase) 		5 ARG A  84
ARG A 159
LEU A 182
ASN A 193
VAL A 196
 SO4  A 401 (-2.8A)
SO4  A 401 (-3.0A)
None
SO4  A 401 (-3.7A)
None
 0.34A 6gmdA-5xvuA:
47.4		 6gmdA-5xvuA:
60.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6blj SERINE-TRNA LIGASE

(Naegleria
fowleri) 		no annotation 4 ARG A  25
LEU A 373
ASN A 144
VAL A 146
 None
 1.22A 6gmdA-6bljA:
undetectable		 6gmdA-6bljA:
undetectable