SIMILAR PATTERNS OF AMINO ACIDS FOR 6FGD_A_ACTA807_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1now BETA-HEXOSAMINIDASE
BETA CHAIN

(Homo sapiens) 		PF00728
(Glyco_hydro_20)
PF14845
(Glycohydro_20b2) 		4 PRO A 468
LEU A 445
VAL A 509
ARG A 512
 None
 1.40A 6fgdA-1nowA:
1.2		 6fgdA-1nowA:
22.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1omx ALPHA-1,4-N-ACETYLHE
XOSAMINYLTRANSFERASE
EXTL2

(Mus musculus) 		PF09258
(Glyco_transf_64) 		4 PRO A 308
LEU A 309
VAL A 253
ARG A 255
 None
 1.20A 6fgdA-1omxA:
0.0		 6fgdA-1omxA:
21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tex STF0
SULFOTRANSFERASE

(Mycolicibacterium
smegmatis) 		PF09037
(Sulphotransf) 		4 PRO A 136
LEU A   9
VAL A 131
ARG A 129
 None
 1.37A 6fgdA-1texA:
2.4		 6fgdA-1texA:
21.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1u6m ACETYLTRANSFERASE,
GNAT FAMILY

(Enterococcus
faecalis) 		PF00583
(Acetyltransf_1) 		4 PRO A  29
LEU A  31
VAL A 100
ARG A 101
 None
 1.28A 6fgdA-1u6mA:
0.0		 6fgdA-1u6mA:
20.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1v29 NITRILE HYDRATASE A
CHAIN

(Bacillus
smithii) 		PF02979
(NHase_alpha) 		4 PRO A  88
LEU A  84
VAL A 108
ARG A 106
 None
 1.42A 6fgdA-1v29A:
undetectable		 6fgdA-1v29A:
19.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ve5 THREONINE DEAMINASE

(Thermus
thermophilus) 		PF00291
(PALP) 		4 PRO A 226
LEU A 222
VAL A 233
ARG A 234
 None
 1.43A 6fgdA-1ve5A:
2.8		 6fgdA-1ve5A:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yi7 BETA-XYLOSIDASE,
FAMILY 43 GLYCOSYL
HYDROLASE

(Clostridium
acetobutylicum) 		PF04616
(Glyco_hydro_43) 		4 PRO A 302
LEU A 252
VAL A 304
ARG A 303
 None
 1.43A 6fgdA-1yi7A:
0.0		 6fgdA-1yi7A:
20.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2aka DYNAMIN-1

(Rattus
norvegicus) 		PF00350
(Dynamin_N)
PF01031
(Dynamin_M) 		4 PRO B  58
LEU B  69
VAL B  97
ARG B  98
 None
 1.34A 6fgdA-2akaB:
0.0		 6fgdA-2akaB:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fja ADENYLYLSULFATE
REDUCTASE, SUBUNIT A
ADENYLYLSULFATE
REDUCTASE, SUBUNIT B

(Archaeoglobus
fulgidus;
Archaeoglobus
fulgidus) 		PF00890
(FAD_binding_2)
PF02910
(Succ_DH_flav_C)
PF12139
(APS-reductase_C)
PF13187
(Fer4_9) 		4 PRO B 844
LEU A  79
VAL A 116
ARG A 114
 None
 1.49A 6fgdA-2fjaB:
undetectable		 6fgdA-2fjaB:
15.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ipc PREPROTEIN
TRANSLOCASE SECA
SUBUNIT

(Thermus
thermophilus) 		PF01043
(SecA_PP_bind)
PF07516
(SecA_SW)
PF07517
(SecA_DEAD) 		4 PRO A 466
LEU A 463
VAL A 539
ARG A 541
 None
 1.34A 6fgdA-2ipcA:
undetectable		 6fgdA-2ipcA:
17.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pyw UNCHARACTERIZED
PROTEIN

(Arabidopsis
thaliana) 		PF01636
(APH) 		4 PRO A 102
LEU A  90
VAL A  61
ARG A 117
 None
None
ADP  A 999 (-4.6A)
None
 1.49A 6fgdA-2pywA:
undetectable		 6fgdA-2pywA:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2rlq COMPLEMENT FACTOR H

(Homo sapiens) 		PF00084
(Sushi) 		4 PRO A 139
LEU A 120
VAL A 111
ARG A 127
 None
 1.34A 6fgdA-2rlqA:
undetectable		 6fgdA-2rlqA:
15.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yyv PROBABLE
2-PHOSPHOSULFOLACTAT
E PHOSPHATASE

(Thermotoga
maritima) 		PF04029
(2-ph_phosp) 		4 PRO A  77
LEU A 115
VAL A  22
ARG A  24
 None
 1.17A 6fgdA-2yyvA:
undetectable		 6fgdA-2yyvA:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zoo PROBABLE NITRITE
REDUCTASE

(Pseudoalteromonas
haloplanktis) 		PF00034
(Cytochrom_C)
PF00394
(Cu-oxidase)
PF07732
(Cu-oxidase_3) 		4 PRO A  18
LEU A  11
VAL A  64
ARG A  63
 None
 1.26A 6fgdA-2zooA:
undetectable		 6fgdA-2zooA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3aw5 MULTICOPPER OXIDASE

(Pyrobaculum
aerophilum) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 PRO A 258
LEU A 255
VAL A 274
ARG A 246
 None
 1.50A 6fgdA-3aw5A:
undetectable		 6fgdA-3aw5A:
24.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f5x CYCLIN-A2

(Homo sapiens) 		PF00134
(Cyclin_N)
PF02984
(Cyclin_C) 		4 PRO B 195
LEU B 348
VAL B 236
ARG B 241
 None
 1.26A 6fgdA-3f5xB:
undetectable		 6fgdA-3f5xB:
21.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kw7 LACCASE B

(Trametes sp.
AH28-2) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 PRO A 307
LEU A 305
VAL A 411
ARG A 427
 None
 1.34A 6fgdA-3kw7A:
undetectable		 6fgdA-3kw7A:
22.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pqv RCL1 PROTEIN

(Kluyveromyces
lactis) 		PF01137
(RTC)
PF05189
(RTC_insert) 		4 PRO A 101
LEU A 105
VAL A  20
ARG A  17
 None
None
None
TAR  A 401 (-4.2A)
 1.30A 6fgdA-3pqvA:
undetectable		 6fgdA-3pqvA:
21.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3t34 DYNAMIN-RELATED
PROTEIN 1A, LINKER,
DYNAMIN-RELATED
PROTEIN 1A

(Arabidopsis
thaliana) 		PF00350
(Dynamin_N)
PF01031
(Dynamin_M) 		4 PRO A  61
LEU A  72
VAL A 103
ARG A 104
 None
 1.47A 6fgdA-3t34A:
2.1		 6fgdA-3t34A:
23.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v77 PUTATIVE
FUMARYLACETOACETATE
ISOMERASE/HYDROLASE

(Oleispira
antarctica) 		PF01557
(FAA_hydrolase) 		4 PRO A  37
LEU A 166
VAL A  21
ARG A  23
 None
None
None
ACT  A 304 ( 3.9A)
 1.41A 6fgdA-3v77A:
undetectable		 6fgdA-3v77A:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zbm COPPER-CONTAINING
NITRITE REDUCTASE

(Ralstonia
pickettii) 		PF07732
(Cu-oxidase_3)
PF13442
(Cytochrome_CBB3) 		4 PRO A  28
LEU A  21
VAL A  74
ARG A  73
 None
 1.29A 6fgdA-3zbmA:
undetectable		 6fgdA-3zbmA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ikh GLUTATHIONE
S-TRANSFERASE

(Pseudomonas
protegens) 		PF00043
(GST_C)
PF02798
(GST_N) 		4 PRO A 231
LEU A  23
VAL A  50
ARG A  49
 None
 1.33A 6fgdA-4ikhA:
2.2		 6fgdA-4ikhA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ina SACCHAROPINE
DEHYDROGENASE

(Wolinella
succinogenes) 		PF03435
(Sacchrp_dh_NADP)
PF16653
(Sacchrp_dh_C) 		4 PRO A 284
LEU A 288
VAL A 267
ARG A 271
 None
 1.37A 6fgdA-4inaA:
3.8		 6fgdA-4inaA:
23.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k9q BENZOYLFORMATE
DECARBOXYLASE

(Polynucleobacter
necessarius) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		4 PRO A 232
LEU A 257
VAL A 274
ARG A 276
 None
 1.36A 6fgdA-4k9qA:
2.6		 6fgdA-4k9qA:
22.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ml9 UNCHARACTERIZED
PROTEIN

(Sebaldella
termitidis) 		PF00977
(His_biosynth) 		4 PRO A  58
LEU A  62
VAL A  78
ARG A  79
 EDO  A 306 ( 4.8A)
EDO  A 310 (-4.1A)
None
None
 1.42A 6fgdA-4ml9A:
undetectable		 6fgdA-4ml9A:
22.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p42 EXTENDED
SYNAPTOTAGMIN-2

(Homo sapiens) 		PF00168
(C2)
PF17047
(SMP_LBD) 		4 PRO A 554
LEU A 520
VAL A 533
ARG A 548
 None
 1.44A 6fgdA-4p42A:
undetectable		 6fgdA-4p42A:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r16 418AA LONG
HYPOTHETICAL
UDP-N-ACETYL-D-MANNO
SAMINURONIC ACID
DEHYDROGENASE

(Pyrococcus
horikoshii) 		PF00984
(UDPG_MGDP_dh)
PF03720
(UDPG_MGDP_dh_C)
PF03721
(UDPG_MGDP_dh_N) 		4 PRO A 263
LEU A 266
VAL A 213
ARG A 281
 None
 1.41A 6fgdA-4r16A:
3.0		 6fgdA-4r16A:
22.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r86 RND FAMILY
AMINOGLYCOSIDE/MULTI
DRUG EFFLUX PUMP

(Salmonella
enterica) 		PF00873
(ACR_tran) 		4 PRO A 131
LEU A 279
VAL A 135
ARG A 134
 None
 1.39A 6fgdA-4r86A:
undetectable		 6fgdA-4r86A:
21.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4u90 GEPHYRIN

(Rattus
norvegicus) 		PF00994
(MoCF_biosynth)
PF03453
(MoeA_N)
PF03454
(MoeA_C) 		4 PRO A 338
LEU A 340
VAL A 617
ARG A 618
 None
 0.13A 6fgdA-4u90A:
50.7		 6fgdA-4u90A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d3q DYNAMIN-1,DYNAMIN-1

(Homo sapiens) 		PF00350
(Dynamin_N)
PF01031
(Dynamin_M) 		4 PRO A  58
LEU A  69
VAL A  97
ARG A  98
 None
 1.35A 6fgdA-5d3qA:
1.8		 6fgdA-5d3qA:
22.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nv3 RIBULOSE
BISPHOSPHATE
CARBOXYLASE LARGE
CHAIN

(Rhodobacter
sphaeroides) 		PF00016
(RuBisCO_large)
PF02788
(RuBisCO_large_N) 		4 PRO A 377
LEU A 327
VAL A 349
ARG A 351
 None
 1.48A 6fgdA-5nv3A:
1.7		 6fgdA-5nv3A:
21.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6eom MUTT/NUDIX FAMILY
PROTEIN

(Caldithrix
abyssi) 		no annotation 4 PRO A 283
LEU A 418
VAL A 497
ARG A 498
 None
 1.38A 6fgdA-6eomA:
undetectable		 6fgdA-6eomA:
undetectable