SIMILAR PATTERNS OF AMINO ACIDS FOR 6DM2_C_CYZC1302

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wa5 IMPORTIN ALPHA
RE-EXPORTER

(Saccharomyces
cerevisiae) 		PF03378
(CAS_CSE1)
PF03810
(IBN_N)
PF08506
(Cse1) 		5 ILE C 109
PRO C  92
SER C  96
LEU C 128
ASP C 136
 None
 1.49A 6dm2B-1wa5C:
3.3
6dm2C-1wa5C:
2.7		 6dm2B-1wa5C:
6.01
6dm2C-1wa5C:
6.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1x5x FIBRONECTIN TYPE-III
DOMAIN CONTAINING
PROTEIN 3A

(Homo sapiens) 		PF00041
(fn3) 		5 SER A  32
MET A  10
SER A   9
LEU A  64
SER A  29
 None
 1.43A 6dm2B-1x5xA:
undetectable
6dm2C-1x5xA:
undetectable		 6dm2B-1x5xA:
17.12
6dm2C-1x5xA:
17.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2iag PROSTACYCLIN
SYNTHASE

(Homo sapiens) 		PF00067
(p450) 		5 ILE A 451
PRO A 290
MET A 486
LEU A 295
SER A 348
 None
 1.21A 6dm2B-2iagA:
undetectable
6dm2C-2iagA:
0.0		 6dm2B-2iagA:
11.29
6dm2C-2iagA:
11.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p3x POLYPHENOL OXIDASE,
CHLOROPLAST

(Vitis vinifera) 		PF00264
(Tyrosinase)
PF12142
(PPO1_DWL) 		5 PRO A 153
MET A 150
LEU A 173
ASP A 191
LYS A 195
 None
 1.46A 6dm2B-2p3xA:
undetectable
6dm2C-2p3xA:
undetectable		 6dm2B-2p3xA:
13.57
6dm2C-2p3xA:
13.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xub DNA-DIRECTED RNA
POLYMERASE III
SUBUNIT RPC3

(Homo sapiens) 		PF05645
(RNA_pol_Rpc82)
PF08221
(HTH_9) 		5 ILE A 293
SER A 264
PRO A 298
LEU A 308
ASP A 260
 None
 1.39A 6dm2B-2xubA:
4.9
6dm2C-2xubA:
4.4		 6dm2B-2xubA:
11.09
6dm2C-2xubA:
11.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ftj MACROLIDE EXPORT
ATP-BINDING/PERMEASE
PROTEIN MACB

(Aggregatibacter
actinomycetemcomitans) 		PF12704
(MacB_PCD) 		5 ILE A 472
PRO A 439
LEU A 379
SER A 463
ASP A 404
 None
 1.43A 6dm2B-3ftjA:
undetectable
6dm2C-3ftjA:
undetectable		 6dm2B-3ftjA:
18.91
6dm2C-3ftjA:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h8l NADH OXIDASE

(Acidianus
ambivalens) 		PF07992
(Pyr_redox_2) 		5 ILE A 288
MET A  87
SER A  86
LEU A 274
SER A 277
 None
 1.07A 6dm2B-3h8lA:
undetectable
6dm2C-3h8lA:
2.3		 6dm2B-3h8lA:
11.93
6dm2C-3h8lA:
11.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w1j L-SERYL-TRNA(SEC)
SELENIUM TRANSFERASE

(Aquifex
aeolicus) 		PF03841
(SelA) 		5 ILE A  80
PRO A 386
LEU A 286
SER A 250
ASP A 247
 LLP  A 285 (-4.6A)
None
LLP  A 285 ( 4.3A)
None
LLP  A 285 ( 3.0A)
 1.49A 6dm2B-3w1jA:
2.4
6dm2C-3w1jA:
1.8		 6dm2B-3w1jA:
11.58
6dm2C-3w1jA:
11.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wbh ALKALINE PHOSPHATASE

(Halomonas sp.
#593) 		PF00245
(Alk_phosphatase) 		5 ILE A  83
SER A  80
PRO A 127
SER A  78
ASP A  59
 None
 1.46A 6dm2B-3wbhA:
2.6
6dm2C-3wbhA:
0.9		 6dm2B-3wbhA:
10.93
6dm2C-3wbhA:
10.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4d2i HERA

(Sulfolobus
solfataricus) 		PF01935
(DUF87)
PF05872
(DUF853)
PF09378
(HAS-barrel) 		5 ILE A 298
SER A 325
PRO A 194
MET A 320
LEU A 173
 None
 1.47A 6dm2B-4d2iA:
2.3
6dm2C-4d2iA:
3.6		 6dm2B-4d2iA:
9.55
6dm2C-4d2iA:
9.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lvo SUBTILISIN-LIKE
SERINE PROTEASE
SUBTILISIN-LIKE
SERINE PROTEASE

(Plasmodium
falciparum;
Plasmodium
falciparum) 		PF00082
(Peptidase_S8)
no annotation 		5 PRO A 586
MET A 607
LEU A 570
SER A 574
ASP P 217
 None
 1.24A 6dm2B-4lvoA:
7.0
6dm2C-4lvoA:
6.9		 6dm2B-4lvoA:
20.64
6dm2C-4lvoA:
20.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zwn MONOGLYCERIDE LIPASE

(Saccharomyces
cerevisiae) 		PF12146
(Hydrolase_4) 		5 ILE A  55
SER A 123
LEU A 286
SER A 282
ASP A 251
 None
 1.38A 6dm2B-4zwnA:
3.2
6dm2C-4zwnA:
2.0		 6dm2B-4zwnA:
12.58
6dm2C-4zwnA:
12.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ayn SOLUTE CARRIER
FAMILY 39
(IRON-REGULATED
TRANSPORTER)

(Bdellovibrio
bacteriovorus) 		PF06963
(FPN1) 		5 SER A 355
PRO A 299
SER A 294
LEU A 307
SER A 311
 None
 1.46A 6dm2B-5aynA:
3.2
6dm2C-5aynA:
3.0		 6dm2B-5aynA:
13.99
6dm2C-5aynA:
13.99
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5l1b GLUTAMATE RECEPTOR
2,GLUTAMATE RECEPTOR
2

(Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		5 MET A 496
SER A 497
LEU A 751
ASP A 760
LYS A 763
 None
 0.95A 6dm2B-5l1bA:
40.2
6dm2C-5l1bA:
41.9		 6dm2B-5l1bA:
100.00
6dm2C-5l1bA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5wel CHIMERA OF GLUTAMATE
RECEPTOR 2, GERM
CELL-SPECIFIC GENE
1-LIKE PROTEIN

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF07803
(GSG-1)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 None
 0.70A 6dm2B-5welA:
53.2
6dm2C-5welA:
53.6		 6dm2B-5welA:
100.00
6dm2C-5welA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5weo GLUTAMATE RECEPTOR
2,VOLTAGE-DEPENDENT
CALCIUM CHANNEL
GAMMA-2 SUBUNIT
CHIMERA

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF00822
(PMP22_Claudin)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 CYZ  A1302 (-4.5A)
CYZ  A1302 (-4.3A)
CYZ  A1302 (-3.2A)
None
CYZ  A1302 ( 4.1A)
CYZ  A1302 (-3.8A)
CYZ  A1302 (-2.9A)
 0.24A 6dm2B-5weoA:
56.1
6dm2C-5weoA:
56.2		 6dm2B-5weoA:
100.00
6dm2C-5weoA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x6o DNA DAMAGE
CHECKPOINT PROTEIN
LCD1

(Saccharomyces
cerevisiae) 		no annotation 5 ILE G 631
SER G 636
MET G 640
LEU G 575
SER G 579
 None
 1.47A 6dm2B-5x6oG:
undetectable
6dm2C-5x6oG:
1.3		 6dm2B-5x6oG:
17.65
6dm2C-5x6oG:
17.65