SIMILAR PATTERNS OF AMINO ACIDS FOR 6DM0_C_CYZC1302

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qdm PROPHYTEPSIN

(Hordeum vulgare) 		PF00026
(Asp)
PF03489
(SapB_2)
PF05184
(SapB_1) 		5 ILE A  22
SER A  93
SER A  66
LEU A  42
ASP A 103
 None
 1.40A 6dm0B-1qdmA:
undetectable
6dm0C-1qdmA:
0.0		 6dm0B-1qdmA:
10.35
6dm0C-1qdmA:
10.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hyt TETR-FAMILY
TRANSCRIPTIONAL
REGULATOR

(Pectobacterium
atrosepticum) 		PF00440
(TetR_N) 		5 ILE A 156
SER A 130
SER A  78
LEU A 160
ASP A  71
 None
None
None
EDO  A 197 ( 4.8A)
None
 1.23A 6dm0B-2hytA:
2.0
6dm0C-2hytA:
undetectable		 6dm0B-2hytA:
14.78
6dm0C-2hytA:
14.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wsb GALACTITOL
DEHYDROGENASE

(Rhodobacter
sphaeroides) 		PF13561
(adh_short_C2) 		5 ILE A 225
SER A  21
LEU A 142
SER A  92
ASP A  42
 None
NAD  A 500 (-2.7A)
NAD  A 500 (-3.7A)
NAD  A 500 (-3.1A)
NAD  A 500 (-2.8A)
 1.28A 6dm0B-2wsbA:
4.8
6dm0C-2wsbA:
4.7		 6dm0B-2wsbA:
14.74
6dm0C-2wsbA:
14.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xub DNA-DIRECTED RNA
POLYMERASE III
SUBUNIT RPC3

(Homo sapiens) 		PF05645
(RNA_pol_Rpc82)
PF08221
(HTH_9) 		5 ILE A 293
SER A 264
PRO A 298
LEU A 308
ASP A 260
 None
 1.42A 6dm0B-2xubA:
4.9
6dm0C-2xubA:
4.3		 6dm0B-2xubA:
11.09
6dm0C-2xubA:
11.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ftj MACROLIDE EXPORT
ATP-BINDING/PERMEASE
PROTEIN MACB

(Aggregatibacter
actinomycetemcomitans) 		PF12704
(MacB_PCD) 		5 ILE A 472
PRO A 439
LEU A 379
SER A 463
ASP A 404
 None
 1.41A 6dm0B-3ftjA:
undetectable
6dm0C-3ftjA:
undetectable		 6dm0B-3ftjA:
18.91
6dm0C-3ftjA:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h8l NADH OXIDASE

(Acidianus
ambivalens) 		PF07992
(Pyr_redox_2) 		5 ILE A 288
MET A  87
SER A  86
LEU A 274
SER A 277
 None
 1.14A 6dm0B-3h8lA:
0.6
6dm0C-3h8lA:
2.3		 6dm0B-3h8lA:
11.93
6dm0C-3h8lA:
11.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k3p D-ALANINE--D-ALANINE
LIGASE

(Streptococcus
mutans) 		PF01820
(Dala_Dala_lig_N)
PF07478
(Dala_Dala_lig_C) 		5 PRO A 316
MET A 314
SER A 313
LEU A 285
ASP A 289
 None
 1.06A 6dm0B-3k3pA:
3.0
6dm0C-3k3pA:
0.0		 6dm0B-3k3pA:
14.60
6dm0C-3k3pA:
14.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w1j L-SERYL-TRNA(SEC)
SELENIUM TRANSFERASE

(Aquifex
aeolicus) 		PF03841
(SelA) 		5 ILE A  80
PRO A 386
LEU A 286
SER A 250
ASP A 247
 LLP  A 285 (-4.6A)
None
LLP  A 285 ( 4.3A)
None
LLP  A 285 ( 3.0A)
 1.48A 6dm0B-3w1jA:
3.0
6dm0C-3w1jA:
2.9		 6dm0B-3w1jA:
11.58
6dm0C-3w1jA:
11.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tr2 SUBTILISIN-LIKE 1
SERINE PROTEASE

(Plasmodium
vivax) 		PF00082
(Peptidase_S8) 		5 PRO A 529
MET A 550
LEU A 513
SER A 517
ASP A 202
 None
 1.33A 6dm0B-4tr2A:
5.9
6dm0C-4tr2A:
5.6		 6dm0B-4tr2A:
8.65
6dm0C-4tr2A:
8.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zwn MONOGLYCERIDE LIPASE

(Saccharomyces
cerevisiae) 		PF12146
(Hydrolase_4) 		5 ILE A  55
SER A 123
LEU A 286
SER A 282
ASP A 251
 None
 1.38A 6dm0B-4zwnA:
0.5
6dm0C-4zwnA:
3.2		 6dm0B-4zwnA:
12.58
6dm0C-4zwnA:
12.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aor DOSAGE COMPENSATION
REGULATOR

(Drosophila
melanogaster) 		PF00270
(DEAD)
PF00271
(Helicase_C)
PF04408
(HA2)
PF07717
(OB_NTP_bind) 		5 ILE A 886
SER A 920
SER A1000
ASP A 998
LYS A1149
 None
 1.48A 6dm0B-5aorA:
3.2
6dm0C-5aorA:
undetectable		 6dm0B-5aorA:
5.36
6dm0C-5aorA:
5.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ayn SOLUTE CARRIER
FAMILY 39
(IRON-REGULATED
TRANSPORTER)

(Bdellovibrio
bacteriovorus) 		PF06963
(FPN1) 		5 SER A 355
PRO A 299
SER A 294
LEU A 307
SER A 311
 None
 1.48A 6dm0B-5aynA:
3.2
6dm0C-5aynA:
2.9		 6dm0B-5aynA:
13.99
6dm0C-5aynA:
13.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b4x REELIN

(Mus musculus) 		PF07974
(EGF_2) 		5 SER A2298
PRO A2039
SER A2036
LEU A2054
SER A2077
 None
 1.49A 6dm0B-5b4xA:
undetectable
6dm0C-5b4xA:
undetectable		 6dm0B-5b4xA:
7.63
6dm0C-5b4xA:
7.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5l1b GLUTAMATE RECEPTOR
2,GLUTAMATE RECEPTOR
2

(Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		5 MET A 496
SER A 497
LEU A 751
ASP A 760
LYS A 763
 None
 0.98A 6dm0B-5l1bA:
40.1
6dm0C-5l1bA:
42.9		 6dm0B-5l1bA:
100.00
6dm0C-5l1bA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5wel CHIMERA OF GLUTAMATE
RECEPTOR 2, GERM
CELL-SPECIFIC GENE
1-LIKE PROTEIN

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF07803
(GSG-1)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 None
 0.75A 6dm0B-5welA:
53.1
6dm0C-5welA:
43.2		 6dm0B-5welA:
100.00
6dm0C-5welA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5weo GLUTAMATE RECEPTOR
2,VOLTAGE-DEPENDENT
CALCIUM CHANNEL
GAMMA-2 SUBUNIT
CHIMERA

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF00822
(PMP22_Claudin)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 CYZ  A1302 (-4.5A)
CYZ  A1302 (-4.3A)
CYZ  A1302 (-3.2A)
None
CYZ  A1302 ( 4.1A)
CYZ  A1302 (-3.8A)
CYZ  A1302 (-2.9A)
 0.32A 6dm0B-5weoA:
56.0
6dm0C-5weoA:
45.3		 6dm0B-5weoA:
100.00
6dm0C-5weoA:
100.00