SIMILAR PATTERNS OF AMINO ACIDS FOR 6DM0_A_CYZA1302

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qdm PROPHYTEPSIN

(Hordeum vulgare) 		PF00026
(Asp)
PF03489
(SapB_2)
PF05184
(SapB_1) 		5 SER A  66
LEU A  42
ASP A 103
ILE A  22
SER A  93
 None
 1.41A 6dm0A-1qdmA:
0.0
6dm0D-1qdmA:
undetectable		 6dm0A-1qdmA:
10.35
6dm0D-1qdmA:
10.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hyt TETR-FAMILY
TRANSCRIPTIONAL
REGULATOR

(Pectobacterium
atrosepticum) 		PF00440
(TetR_N) 		5 SER A  78
LEU A 160
ASP A  71
ILE A 156
SER A 130
 None
EDO  A 197 ( 4.8A)
None
None
None
 1.23A 6dm0A-2hytA:
undetectable
6dm0D-2hytA:
2.1		 6dm0A-2hytA:
14.78
6dm0D-2hytA:
14.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wsb GALACTITOL
DEHYDROGENASE

(Rhodobacter
sphaeroides) 		PF13561
(adh_short_C2) 		5 LEU A 142
SER A  92
ASP A  42
ILE A 225
SER A  21
 NAD  A 500 (-3.7A)
NAD  A 500 (-3.1A)
NAD  A 500 (-2.8A)
None
NAD  A 500 (-2.7A)
 1.28A 6dm0A-2wsbA:
4.7
6dm0D-2wsbA:
4.8		 6dm0A-2wsbA:
14.74
6dm0D-2wsbA:
14.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xub DNA-DIRECTED RNA
POLYMERASE III
SUBUNIT RPC3

(Homo sapiens) 		PF05645
(RNA_pol_Rpc82)
PF08221
(HTH_9) 		5 PRO A 298
LEU A 308
ASP A 260
ILE A 293
SER A 264
 None
 1.41A 6dm0A-2xubA:
4.2
6dm0D-2xubA:
4.9		 6dm0A-2xubA:
11.09
6dm0D-2xubA:
11.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ftj MACROLIDE EXPORT
ATP-BINDING/PERMEASE
PROTEIN MACB

(Aggregatibacter
actinomycetemcomitans) 		PF12704
(MacB_PCD) 		5 PRO A 439
LEU A 379
SER A 463
ASP A 404
ILE A 472
 None
 1.41A 6dm0A-3ftjA:
undetectable
6dm0D-3ftjA:
undetectable		 6dm0A-3ftjA:
18.91
6dm0D-3ftjA:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h8l NADH OXIDASE

(Acidianus
ambivalens) 		PF07992
(Pyr_redox_2) 		5 MET A  87
SER A  86
LEU A 274
SER A 277
ILE A 288
 None
 1.15A 6dm0A-3h8lA:
2.3
6dm0D-3h8lA:
0.4		 6dm0A-3h8lA:
11.93
6dm0D-3h8lA:
11.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k3p D-ALANINE--D-ALANINE
LIGASE

(Streptococcus
mutans) 		PF01820
(Dala_Dala_lig_N)
PF07478
(Dala_Dala_lig_C) 		5 PRO A 316
MET A 314
SER A 313
LEU A 285
ASP A 289
 None
 1.06A 6dm0A-3k3pA:
0.0
6dm0D-3k3pA:
3.0		 6dm0A-3k3pA:
14.60
6dm0D-3k3pA:
14.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w1j L-SERYL-TRNA(SEC)
SELENIUM TRANSFERASE

(Aquifex
aeolicus) 		PF03841
(SelA) 		5 PRO A 386
LEU A 286
SER A 250
ASP A 247
ILE A  80
 None
LLP  A 285 ( 4.3A)
None
LLP  A 285 ( 3.0A)
LLP  A 285 (-4.6A)
 1.48A 6dm0A-3w1jA:
3.1
6dm0D-3w1jA:
3.0		 6dm0A-3w1jA:
11.58
6dm0D-3w1jA:
11.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tr2 SUBTILISIN-LIKE 1
SERINE PROTEASE

(Plasmodium
vivax) 		PF00082
(Peptidase_S8) 		5 PRO A 529
MET A 550
LEU A 513
SER A 517
ASP A 202
 None
 1.33A 6dm0A-4tr2A:
5.7
6dm0D-4tr2A:
6.2		 6dm0A-4tr2A:
8.65
6dm0D-4tr2A:
8.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zwn MONOGLYCERIDE LIPASE

(Saccharomyces
cerevisiae) 		PF12146
(Hydrolase_4) 		5 LEU A 286
SER A 282
ASP A 251
ILE A  55
SER A 123
 None
 1.38A 6dm0A-4zwnA:
undetectable
6dm0D-4zwnA:
2.6		 6dm0A-4zwnA:
12.58
6dm0D-4zwnA:
12.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aor DOSAGE COMPENSATION
REGULATOR

(Drosophila
melanogaster) 		PF00270
(DEAD)
PF00271
(Helicase_C)
PF04408
(HA2)
PF07717
(OB_NTP_bind) 		5 SER A 920
SER A1000
ASP A 998
LYS A1149
ILE A 886
 None
 1.48A 6dm0A-5aorA:
2.1
6dm0D-5aorA:
undetectable		 6dm0A-5aorA:
5.36
6dm0D-5aorA:
5.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ayn SOLUTE CARRIER
FAMILY 39
(IRON-REGULATED
TRANSPORTER)

(Bdellovibrio
bacteriovorus) 		PF06963
(FPN1) 		5 PRO A 299
SER A 294
LEU A 307
SER A 311
SER A 355
 None
 1.48A 6dm0A-5aynA:
2.9
6dm0D-5aynA:
3.1		 6dm0A-5aynA:
13.99
6dm0D-5aynA:
13.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b4x REELIN

(Mus musculus) 		PF07974
(EGF_2) 		5 PRO A2039
SER A2036
LEU A2054
SER A2077
SER A2298
 None
 1.50A 6dm0A-5b4xA:
undetectable
6dm0D-5b4xA:
undetectable		 6dm0A-5b4xA:
7.63
6dm0D-5b4xA:
7.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5l1b GLUTAMATE RECEPTOR
2,GLUTAMATE RECEPTOR
2

(Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		5 MET A 496
SER A 497
LEU A 751
ASP A 760
LYS A 763
 None
 0.98A 6dm0A-5l1bA:
42.9
6dm0D-5l1bA:
40.1		 6dm0A-5l1bA:
100.00
6dm0D-5l1bA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5wel CHIMERA OF GLUTAMATE
RECEPTOR 2, GERM
CELL-SPECIFIC GENE
1-LIKE PROTEIN

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF01094
(ANF_receptor)
PF07803
(GSG-1)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 None
 0.74A 6dm0A-5welA:
43.2
6dm0D-5welA:
53.0		 6dm0A-5welA:
100.00
6dm0D-5welA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5weo GLUTAMATE RECEPTOR
2,VOLTAGE-DEPENDENT
CALCIUM CHANNEL
GAMMA-2 SUBUNIT
CHIMERA

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF00822
(PMP22_Claudin)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		7 PRO A 494
MET A 496
SER A 497
LEU A 751
SER A 754
ASP A 760
LYS A 763
 CYZ  A1302 (-4.5A)
CYZ  A1302 (-4.3A)
CYZ  A1302 (-3.2A)
None
CYZ  A1302 ( 4.1A)
CYZ  A1302 (-3.8A)
CYZ  A1302 (-2.9A)
 0.32A 6dm0A-5weoA:
45.4
6dm0D-5weoA:
56.0		 6dm0A-5weoA:
100.00
6dm0D-5weoA:
100.00