SIMILAR PATTERNS OF AMINO ACIDS FOR 6CNK_D_NCTD401_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)

Filter list by:

	Hit	Macromolecule/ Organism	Pfam	Res.	Interface	HETATM	RMSD	Dali Z-score	Seq. Identity (%)
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	2bj0	ACETYLCHOLINE-BINDIN G PROTEIN (Bulinus truncatus)	PF02931 (Neur_chan_LBD)	5	TYR A 88 TRP A 142 THR A 143 TYR A 184 TYR A 191	None CXS A1204 (-3.6A) CXS A1204 ( 4.7A) CXS A1204 (-4.6A) CXS A1204 (-4.7A)	0.84A	6cnkD-2bj0A: 21.3 6cnkE-2bj0A: 9.9	6cnkD-2bj0A: 17.44 6cnkE-2bj0A: 15.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.	3zdh	ACETYLCHOLINE BINDING PROTEIN (Lymnaea stagnalis)	PF02931 (Neur_chan_LBD)	5	TYR A 89 TRP A 143 THR A 144 TYR A 185 TYR A 192	None XRS A 301 (-3.6A) XRS A 301 ( 4.4A) XRS A 301 ( 4.1A) XRS A 301 (-3.8A)	0.57A	6cnkD-3zdhA: 20.5 6cnkE-3zdhA: 21.2	6cnkD-3zdhA: 19.17 6cnkE-3zdhA: 17.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	5fjv	NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-2 (Homo sapiens)	PF02931 (Neur_chan_LBD)	5	TYR A 122 TRP A 178 THR A 179 TYR A 219 TYR A 226	EPJ A 300 (-4.6A) EPJ A 300 (-3.7A) EPJ A 300 (-3.3A) EPJ A 300 (-3.7A) EPJ A 300 (-3.7A)	0.75A	6cnkD-5fjvA: 23.4 6cnkE-5fjvA: 24.1	6cnkD-5fjvA: 59.38 6cnkE-5fjvA: 21.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.	5kxi	NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-4 (Homo sapiens)	PF02931 (Neur_chan_LBD) PF02932 (Neur_chan_memb)	5	TYR A 100 TRP A 156 THR A 157 TYR A 197 TYR A 204	NCT A 402 (-4.8A) NCT A 402 (-3.9A) NCT A 402 (-4.6A) NCT A 402 ( 4.9A) NCT A 402 (-3.8A)	0.60A	6cnkD-5kxiA: 36.5 6cnkE-5kxiA: 34.3	6cnkD-5kxiA: 100.00 6cnkE-5kxiA: 12.96

[["6CNK_D_NCTD401_1","2bj0","Bulinus truncatus","ACETYLCHOLINE-BINDING PROTEIN","PF02931(Neur_chan_LBD)",5,"TYR A  88;TRP A 142;THR A 143;TYR A 184;TYR A 191","None;CXS A1204 (-3.6A);CXS A1204 ( 4.7A);CXS A1204 (-4.6A);CXS A1204 (-4.7A)","0.84A","6cnkD-2bj0A:21.3;6cnkE-2bj0A:9.9","6cnkD-2bj0A:17.44;6cnkE-2bj0A:15.08"],["6CNK_D_NCTD401_1","3zdh","Lymnaea stagnalis","ACETYLCHOLINE BINDING PROTEIN","PF02931(Neur_chan_LBD)",5,"TYR A  89;TRP A 143;THR A 144;TYR A 185;TYR A 192","None;XRS A 301 (-3.6A);XRS A 301 ( 4.4A);XRS A 301 ( 4.1A);XRS A 301 (-3.8A)","0.57A","6cnkD-3zdhA:20.5;6cnkE-3zdhA:21.2","6cnkD-3zdhA:19.17;6cnkE-3zdhA:17.56"],["6CNK_D_NCTD401_1","5fjv","Homo sapiens","NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-2","PF02931(Neur_chan_LBD)",5,"TYR A 122;TRP A 178;THR A 179;TYR A 219;TYR A 226","EPJ A 300 (-4.6A);EPJ A 300 (-3.7A);EPJ A 300 (-3.3A);EPJ A 300 (-3.7A);EPJ A 300 (-3.7A)","0.75A","6cnkD-5fjvA:23.4;6cnkE-5fjvA:24.1","6cnkD-5fjvA:59.38;6cnkE-5fjvA:21.78"],["6CNK_D_NCTD401_1","5kxi","Homo sapiens","NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-4","PF02931(Neur_chan_LBD);PF02932(Neur_chan_memb)",5,"TYR A 100;TRP A 156;THR A 157;TYR A 197;TYR A 204","NCT A 402 (-4.8A);NCT A 402 (-3.9A);NCT A 402 (-4.6A);NCT A 402 ( 4.9A);NCT A 402 (-3.8A)","0.60A","6cnkD-5kxiA:36.5;6cnkE-5kxiA:34.3","6cnkD-5kxiA:100.00;6cnkE-5kxiA:12.96"]]