SIMILAR PATTERNS OF AMINO ACIDS FOR 6CI6_A_NBOA606_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ipa RNA 2'-O-RIBOSE
METHYLTRANSFERASE

(Thermus
thermophilus) 		PF00588
(SpoU_methylase)
PF08032
(SpoU_sub_bind) 		5 ARG A  20
VAL A 147
GLY A 149
LEU A 130
SER A 155
 None
 1.37A 6ci6A-1ipaA:
undetectable		 6ci6A-1ipaA:
14.96
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		8 ASN A 391
PHE A 403
ARG A 410
LYS A 414
VAL A 433
GLY A 434
LEU A 453
SER A 489
 None
 0.84A 6ci6A-1tf0A:
46.0		 6ci6A-1tf0A:
87.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		8 ASN A 391
PHE A 403
TYR A 411
LYS A 414
VAL A 433
GLY A 434
LEU A 453
SER A 489
 None
 0.68A 6ci6A-1tf0A:
46.0		 6ci6A-1tf0A:
87.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2f7n DNA-BINDING STRESS
RESPONSE PROTEIN,
DPS FAMILY

(Deinococcus
radiodurans) 		PF00210
(Ferritin) 		5 TYR A 164
VAL A 136
SER A  74
LEU A  75
SER A 108
 None
 1.44A 6ci6A-2f7nA:
undetectable		 6ci6A-2f7nA:
16.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hfs MEVALONATE KINASE,
PUTATIVE

(Leishmania
major) 		PF00288
(GHMP_kinases_N)
PF08544
(GHMP_kinases_C) 		5 ASN A 156
VAL A 142
GLY A 143
SER A 139
LEU A 138
 None
 1.44A 6ci6A-2hfsA:
0.0		 6ci6A-2hfsA:
12.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2iv2 FORMATE
DEHYDROGENASE H

(Escherichia
coli) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF04879
(Molybdop_Fe4S4) 		5 CYH X 140
ARG X 382
VAL X 306
GLY X 147
SER X 384
 None
 1.47A 6ci6A-2iv2X:
0.0		 6ci6A-2iv2X:
7.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vbk TAILSPIKE-PROTEIN

(Shigella virus
Sf6) 		PF12708
(Pectate_lyase_3) 		5 VAL A 281
GLY A 302
CYH A 326
LEU A 242
SER A 238
 None
 1.40A 6ci6A-2vbkA:
undetectable		 6ci6A-2vbkA:
9.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w9y FATTY ACID/RETINOL
BINDING PROTEIN
PROTEIN 7, ISOFORM
A, CONFIRMED BY
TRANSCRIPT EVIDENCE

(Caenorhabditis
elegans) 		PF05823
(Gp-FAR-1) 		5 CYH A  46
PHE A  37
VAL A  53
LEU A  60
SER A  24
 None
 1.48A 6ci6A-2w9yA:
2.9		 6ci6A-2w9yA:
21.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cj1 ECTONUCLEOSIDE
TRIPHOSPHATE
DIPHOSPHOHYDROLASE 2

(Rattus
norvegicus) 		PF01150
(GDA1_CD39) 		5 ASN A 443
PHE A 168
VAL A 171
GLY A 439
LEU A 228
 None
 1.33A 6ci6A-3cj1A:
undetectable		 6ci6A-3cj1A:
11.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e0j DNA POLYMERASE
SUBUNIT DELTA-2

(Homo sapiens) 		PF04042
(DNA_pol_E_B) 		5 PHE A 410
VAL A 426
GLY A 411
LEU A 424
SER A 444
 None
 1.43A 6ci6A-3e0jA:
undetectable		 6ci6A-3e0jA:
11.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gm8 GLYCOSIDE HYDROLASE
FAMILY 2, CANDIDATE
BETA-GLYCOSIDASE

(Bacteroides
vulgatus) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 PHE A 284
VAL A 282
GLY A 283
LEU A 264
SER A 230
 None
 1.19A 6ci6A-3gm8A:
undetectable		 6ci6A-3gm8A:
9.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ast ALDO-KETO REDUCTASE
AKR14A1

(Escherichia
coli) 		PF00248
(Aldo_ket_red) 		5 TYR A 170
VAL A 217
GLY A 218
CYH A  18
LEU A 189
 None
 1.08A 6ci6A-4astA:
undetectable		 6ci6A-4astA:
15.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g9q 4-CARBOXYMUCONOLACTO
NE DECARBOXYLASE

(Sinorhizobium
meliloti) 		PF02627
(CMD) 		5 ARG A 179
VAL A  83
GLY A  82
SER A  55
LEU A  56
 None
 1.38A 6ci6A-4g9qA:
undetectable		 6ci6A-4g9qA:
19.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jon CENTROSOMAL PROTEIN
OF 170 KDA

(Homo sapiens) 		PF00498
(FHA) 		5 VAL A  39
GLY A  90
SER A  36
LEU A  34
SER A  10
 None
 1.37A 6ci6A-4jonA:
undetectable		 6ci6A-4jonA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lih GAMMA-GLUTAMYL-GAMMA
-AMINOBUTYRALDEHYDE
DEHYDROGENASE

(Burkholderia
cenocepacia) 		PF00171
(Aldedh) 		5 PHE A 465
TYR A 455
GLY A 466
SER A 471
SER A 305
 MES  A 501 ( 4.9A)
None
None
None
None
 1.36A 6ci6A-4lihA:
undetectable		 6ci6A-4lihA:
10.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n18 D-ISOMER SPECIFIC
2-HYDROXYACID
DEHYDROGENASE FAMILY
PROTEIN

(Klebsiella
pneumoniae) 		PF02826
(2-Hacid_dh_C) 		5 PHE A 108
TYR A 100
VAL A 268
GLY A 245
LEU A 248
 None
 1.45A 6ci6A-4n18A:
undetectable		 6ci6A-4n18A:
11.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4po0 SERUM ALBUMIN

(Oryctolagus
cuniculus) 		PF00273
(Serum_albumin) 		8 ASN A 391
PHE A 403
ARG A 410
TYR A 411
VAL A 433
GLY A 434
LEU A 453
SER A 489
 NPS  A 601 (-4.3A)
None
NPS  A 601 (-4.5A)
NPS  A 601 (-4.3A)
None
None
NPS  A 601 (-4.7A)
NPS  A 601 (-3.1A)
 0.48A 6ci6A-4po0A:
46.2		 6ci6A-4po0A:
10.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4po0 SERUM ALBUMIN

(Oryctolagus
cuniculus) 		PF00273
(Serum_albumin) 		7 ASN A 391
TYR A 411
LYS A 414
VAL A 433
GLY A 434
LEU A 453
SER A 489
 NPS  A 601 (-4.3A)
NPS  A 601 (-4.3A)
NPS  A 601 (-2.7A)
None
None
NPS  A 601 (-4.7A)
NPS  A 601 (-3.1A)
 0.65A 6ci6A-4po0A:
46.2		 6ci6A-4po0A:
10.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4prk 4-PHOSPHOERYTHRONATE
DEHYDROGENASE

(Lactobacillus
jensenii) 		PF00389
(2-Hacid_dh)
PF02826
(2-Hacid_dh_C) 		5 ASN A 180
VAL A 154
GLY A 155
SER A 159
LEU A 187
 None
 1.27A 6ci6A-4prkA:
undetectable		 6ci6A-4prkA:
14.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rgp CSM6_III-A

(Streptococcus
mutans) 		PF09659
(Cas_Csm6) 		5 ASN A  72
TYR A 241
LYS A 244
VAL A  48
SER A  68
 None
 1.33A 6ci6A-4rgpA:
1.3		 6ci6A-4rgpA:
14.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4s13 FERULIC ACID
DECARBOXYLASE 1

(Saccharomyces
cerevisiae) 		PF01977
(UbiD) 		5 PHE A  53
VAL A 316
GLY A  68
CYH A  69
LEU A 144
 None
 1.28A 6ci6A-4s13A:
undetectable		 6ci6A-4s13A:
10.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4v15 D-THREONINE ALDOLASE

(Achromobacter
xylosoxidans) 		PF01168
(Ala_racemase_N)
PF14031
(D-ser_dehydrat) 		5 ASN A 127
VAL A 160
GLY A 159
CYH A 158
LEU A 169
 None
 1.47A 6ci6A-4v15A:
undetectable		 6ci6A-4v15A:
13.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ywe PUTATIVE ALDEHYDE
DEHYDROGENASE

(Burkholderia
cenocepacia) 		PF00171
(Aldedh) 		5 PHE A 448
TYR A 438
GLY A 449
SER A 454
SER A 286
 None
 1.44A 6ci6A-4yweA:
undetectable		 6ci6A-4yweA:
10.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5abm RETINAL
DEHYDROGENASE 1

(Ovis aries) 		PF00171
(Aldedh) 		5 PHE A 465
TYR A 456
GLY A 466
SER A 471
SER A 306
 None
 1.44A 6ci6A-5abmA:
undetectable		 6ci6A-5abmA:
11.90
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5dqf SERUM ALBUMIN

(Equus caballus) 		PF00273
(Serum_albumin) 		10 ASN A 390
PHE A 402
ARG A 409
TYR A 410
LYS A 413
VAL A 432
GLY A 433
SER A 448
LEU A 452
SER A 488
 None
 0.50A 6ci6A-5dqfA:
51.9		 6ci6A-5dqfA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5eik UNCHARACTERIZED
PROTEIN Y57A10A.28

(Caenorhabditis
elegans) 		PF05197
(TRIC) 		5 ARG A 147
VAL A 159
GLY A 141
SER A  77
LEU A  81
 None
 1.44A 6ci6A-5eikA:
1.8		 6ci6A-5eikA:
18.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5eu6 HUMAN TCR HEAVY
CHAIN

(Homo sapiens) 		PF07654
(C1-set)
PF07686
(V-set) 		5 PHE E 215
TYR E 189
VAL E  13
GLY E 217
LEU E 115
 None
 1.30A 6ci6A-5eu6E:
undetectable		 6ci6A-5eu6E:
16.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ghk SERUM ALBUMIN

(Canis lupus) 		PF00273
(Serum_albumin) 		8 ASN A 391
ARG A 410
TYR A 411
LYS A 414
VAL A 433
GLY A 434
LEU A 453
SER A 489
 None
 0.59A 6ci6A-5ghkA:
45.5		 6ci6A-5ghkA:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ghk SERUM ALBUMIN

(Canis lupus) 		PF00273
(Serum_albumin) 		8 ASN A 391
PHE A 403
ARG A 410
TYR A 411
VAL A 433
GLY A 434
LEU A 453
SER A 489
 None
 0.45A 6ci6A-5ghkA:
45.5		 6ci6A-5ghkA:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gtk BETAINE-ALDEHYDE
DEHYDROGENASE

(Bacillus cereus) 		PF00171
(Aldedh) 		5 PHE A 463
TYR A 454
GLY A 464
SER A 469
SER A 304
 None
 1.36A 6ci6A-5gtkA:
undetectable		 6ci6A-5gtkA:
10.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hzg F-BOX/LRR-REPEAT
MAX2 HOMOLOG

(Oryza sativa) 		no annotation 5 VAL B 276
GLY B 277
SER B 246
LEU B 249
SER B 287
 None
 1.22A 6ci6A-5hzgB:
undetectable		 6ci6A-5hzgB:
7.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5iuw ALDEHYDE
DEHYDROGENASE FAMILY
PROTEIN

(Pseudomonas
syringae group
genomosp. 3) 		no annotation 5 PHE A 467
TYR A 458
GLY A 468
SER A 473
SER A 306
 IAC  A 701 (-4.5A)
None
None
None
None
 1.40A 6ci6A-5iuwA:
undetectable		 6ci6A-5iuwA:
9.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m8h ATP
PHOSPHORIBOSYLTRANSF
ERASE

(Psychrobacter
arcticus) 		PF01634
(HisG) 		5 PHE E  88
VAL E  90
GLY E  89
LEU E 110
SER E 226
 None
 1.48A 6ci6A-5m8hE:
undetectable		 6ci6A-5m8hE:
13.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ohs -

(-) 		no annotation 5 VAL A 138
GLY A 137
SER A 150
LEU A 494
SER A 279
 None
None
None
MPD  A 705 ( 4.5A)
MPD  A 705 ( 3.9A)
 1.30A 6ci6A-5ohsA:
undetectable		 6ci6A-5ohsA:
undetectable
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ori ALBUMIN

(Capra hircus) 		no annotation 9 ASN A 390
PHE A 402
ARG A 409
TYR A 410
LYS A 413
VAL A 432
GLY A 433
LEU A 452
SER A 488
 None
 0.66A 6ci6A-5oriA:
46.1		 6ci6A-5oriA:
81.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5td6 FOG-3 PROTEIN

(Caenorhabditis
elegans) 		PF07742
(BTG) 		5 CYH A  13
PHE A  28
GLY A  29
LEU A  36
SER A  63
 None
 1.48A 6ci6A-5td6A:
1.7		 6ci6A-5td6A:
15.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5yxe SERUM ALBUMIN

(Felis catus) 		no annotation 8 ASN A 391
PHE A 403
ARG A 410
TYR A 411
LYS A 414
VAL A 433
GLY A 434
LEU A 453
 None
 0.84A 6ci6A-5yxeA:
45.3		 6ci6A-5yxeA:
83.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5yxe SERUM ALBUMIN

(Felis catus) 		no annotation 8 ASN A 391
PHE A 403
TYR A 411
LYS A 414
VAL A 433
GLY A 434
LEU A 453
SER A 489
 None
 0.66A 6ci6A-5yxeA:
45.3		 6ci6A-5yxeA:
83.75