SIMILAR PATTERNS OF AMINO ACIDS FOR 6BEE_B_RXMB601

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hal HEPATITIS A PROTEASE
3C

(Hepatovirus A) 		PF00548
(Peptidase_C3) 		5 GLN A  15
PHE A  96
VAL A 204
PHE A  16
PHE A 209
 None
 1.24A 6beeA-2halA:
0.0
6beeB-2halA:
0.0
6beeC-2halA:
0.0		 6beeA-2halA:
18.17
6beeB-2halA:
18.17
6beeC-2halA:
18.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ihp UBIQUITIN
CARBOXYL-TERMINAL
HYDROLASE 5

(Homo sapiens) 		PF00443
(UCH)
PF00627
(UBA)
PF02148
(zf-UBP) 		5 PHE A 461
PHE A 440
PHE A 345
VAL A 570
PHE A 428
 None
 1.08A 6beeA-3ihpA:
0.0
6beeB-3ihpA:
0.0
6beeC-3ihpA:
0.0		 6beeA-3ihpA:
21.11
6beeB-3ihpA:
21.11
6beeC-3ihpA:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rh7 HYPOTHETICAL
OXIDOREDUCTASE

(Sinorhizobium
meliloti) 		PF01613
(Flavin_Reduct) 		5 PHE A  96
PHE A 111
PHE A  37
VAL A  99
GLN A  81
 None
 1.23A 6beeA-3rh7A:
0.0
6beeB-3rh7A:
0.0
6beeC-3rh7A:
0.0		 6beeA-3rh7A:
18.98
6beeB-3rh7A:
18.98
6beeC-3rh7A:
18.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zlp THIOREDOXIN
PEROXIDASE

(Schistosoma
mansoni) 		PF00578
(AhpC-TSA)
PF10417
(1-cysPrx_C) 		5 GLN A 137
GLU A  51
PHE A  55
PHE A 127
VAL A 149
 None
 1.30A 6beeA-3zlpA:
0.0
6beeB-3zlpA:
0.0
6beeC-3zlpA:
0.0		 6beeA-3zlpA:
17.58
6beeB-3zlpA:
17.58
6beeC-3zlpA:
17.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mag SIALIC ACID BINDING
PROTEIN

(Vibrio cholerae) 		PF03480
(DctP) 		5 PHE A 168
PHE A 195
VAL A 265
VAL A 171
GLN A 199
 SO4  A 402 ( 4.0A)
None
None
None
None
 1.49A 6beeA-4magA:
0.0
6beeB-4magA:
0.0
6beeC-4magA:
0.0		 6beeA-4magA:
18.39
6beeB-4magA:
18.39
6beeC-4magA:
18.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4u3w 2-AMINOMUCONATE
6-SEMIALDEHYDE
DEHYDROGENASE

(Burkholderia
cenocepacia) 		PF00171
(Aldedh) 		5 GLN A 445
GLU A 306
PHE A 273
PHE A 410
VAL A 271
 None
 1.22A 6beeA-4u3wA:
0.0
6beeB-4u3wA:
0.0
6beeC-4u3wA:
0.0		 6beeA-4u3wA:
20.89
6beeB-4u3wA:
20.89
6beeC-4u3wA:
20.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5czw MYROILYSIN

(Myroides
profundi) 		PF01400
(Astacin) 		5 GLU A 143
PHE A 144
PHE A 124
VAL A  13
VAL A  69
 ZN  A 301 ( 4.2A)
None
None
None
MLY  A  70 ( 3.0A)
 1.40A 6beeA-5czwA:
0.0
6beeB-5czwA:
0.0
6beeC-5czwA:
0.0		 6beeA-5czwA:
19.35
6beeB-5czwA:
19.35
6beeC-5czwA:
19.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jly THIOREDOXIN
PEROXIDASE-1

(Schistosoma
japonicum) 		PF00578
(AhpC-TSA)
PF10417
(1-cysPrx_C) 		5 GLN A 137
GLU A  51
PHE A  55
PHE A 127
VAL A 149
 None
 1.48A 6beeA-5jlyA:
0.0
6beeB-5jlyA:
0.0
6beeC-5jlyA:
0.0		 6beeA-5jlyA:
15.52
6beeB-5jlyA:
15.52
6beeC-5jlyA:
15.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y09 PROTEASE DO-LIKE 9

(Arabidopsis
thaliana) 		no annotation 5 PHE A 220
PHE A 157
VAL A 177
PHE A 317
VAL A 218
 None
 1.23A 6beeA-5y09A:
0.0
6beeB-5y09A:
0.0
6beeC-5y09A:
0.0		 6beeA-5y09A:
22.66
6beeB-5y09A:
22.66
6beeC-5y09A:
22.66