SIMILAR PATTERNS OF AMINO ACIDS FOR 6BAA_E_GBME2001_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ph5 TELOMERE-BINDING
PROTEIN ALPHA
SUBUNIT

(Sterkiella nova) 		PF02765
(POT1) 		5 ILE A 378
PHE A 415
THR A 422
LEU A 350
SER A 464
 None
 1.14A 6baaE-1ph5A:
0.0		 6baaE-1ph5A:
13.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2c3o PYRUVATE-FERREDOXIN
OXIDOREDUCTASE

(Desulfovibrio
africanus) 		PF01558
(POR)
PF01855
(POR_N)
PF02775
(TPP_enzyme_C)
PF10371
(EKR)
PF13484
(Fer4_16)
PF17147
(PFOR_II) 		5 ILE A 161
ASN A  50
THR A  57
LEU A  56
SER A 163
 None
 1.11A 6baaE-2c3oA:
2.5		 6baaE-2c3oA:
21.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pjr PROTEIN (HELICASE
PCRA)

(Geobacillus
stearothermophilus) 		PF00580
(UvrD-helicase)
PF13361
(UvrD_C) 		5 ILE A  62
PHE A  92
ASN A  66
THR A 536
LEU A 540
 None
 1.37A 6baaE-2pjrA:
0.0		 6baaE-2pjrA:
17.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kcx HYPOXIA-INDUCIBLE
FACTOR 1-ALPHA
INHIBITOR

(Homo sapiens) 		PF13621
(Cupin_8) 		5 ASN A 294
THR A 149
LEU A 186
SER A 240
ARG A 238
 CQL  A   1 ( 4.8A)
None
None
None
None
 1.34A 6baaE-3kcxA:
undetectable		 6baaE-3kcxA:
12.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o2k BREVIANAMIDE F
PRENYLTRANSFERASE

(Aspergillus
fumigatus) 		PF11991
(Trp_DMAT) 		5 ILE A 310
MET A 381
PHE A 365
THR A 217
ARG A 248
 None
 1.21A 6baaE-3o2kA:
0.0		 6baaE-3o2kA:
15.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tal DNA DOUBLE-STRAND
BREAK REPAIR PROTEIN
NURA

(Pyrococcus
furiosus) 		PF09376
(NurA) 		5 TYR A  65
ILE A  64
PHE A  66
THR A 103
LEU A 104
 None
 1.25A 6baaE-3talA:
0.0		 6baaE-3talA:
15.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w9i MULTIDRUG RESISTANCE
PROTEIN MEXB

(Pseudomonas
aeruginosa) 		PF00873
(ACR_tran) 		5 TYR A 327
ILE A 629
ASN A 676
LEU A 672
SER A 605
 None
 1.15A 6baaE-3w9iA:
0.0		 6baaE-3w9iA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4c7v TRANSKETOLASE

(Lactobacillus
salivarius) 		PF00456
(Transketolase_N)
PF02779
(Transket_pyr)
PF02780
(Transketolase_C) 		5 ILE A 515
ASN A 419
MET A 125
THR A 115
LEU A 447
 None
 1.43A 6baaE-4c7vA:
1.3		 6baaE-4c7vA:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eme M18 ASPARTYL
AMINOPEPTIDASE

(Plasmodium
falciparum) 		PF02127
(Peptidase_M18) 		5 ILE A 402
PHE A  68
THR A 558
LEU A 340
SER A 405
 None
 1.29A 6baaE-4emeA:
0.0		 6baaE-4emeA:
16.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fqu PUTATIVE GLUTATHIONE
TRANSFERASE

(Sphingobium
chlorophenolicum) 		PF13409
(GST_N_2)
PF13410
(GST_C_2) 		5 PHE A 232
ASN A 180
THR A 205
LEU A 179
SER A 268
 None
 1.40A 6baaE-4fquA:
2.7		 6baaE-4fquA:
11.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pw0 ALPHA/BETA HYDROLASE
FOLD PROTEIN

(Chitinophaga
pinensis) 		PF00561
(Abhydrolase_1) 		5 ILE A  93
MET A 123
PHE A 101
THR A 273
LEU A 277
 None
 1.39A 6baaE-4pw0A:
undetectable		 6baaE-4pw0A:
10.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5c69 FUSION GLYCOPROTEIN
F0,FIBRITIN

(Enterobacteria
phage Ox2;
Human
orthopneumovirus) 		PF00523
(Fusion_gly) 		5 ARG A 255
ILE A 206
MET A 262
LEU A 233
ARG A 202
 None
 1.35A 6baaE-5c69A:
0.0		 6baaE-5c69A:
16.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gw7 GLUCOSIDASE YGJK

(Escherichia
coli) 		PF01204
(Trehalase) 		5 TYR A 590
ILE A 591
ASN A 615
LEU A 613
SER A 633
 None
 1.45A 6baaE-5gw7A:
0.6		 6baaE-5gw7A:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y6q ALDEHYDE OXIDASE
MEDIUM SUBUNIT
ALDEHYDE OXIDASE
SMALL SUBUNIT

(Methylobacillus
sp. KY4400) 		no annotation 5 TYR B 239
MET B 105
THR A  52
LEU A  61
ARG B 236
 FAD  B 401 (-4.8A)
None
None
FES  A 201 ( 4.3A)
None
 1.28A 6baaE-5y6qB:
undetectable		 6baaE-5y6qB:
3.79
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
6c3p ATP-BINDING CASSETTE
SUB-FAMILY C MEMBER
8

(Homo sapiens) 		no annotation 7 ARG E 306
ILE E 381
MET E 429
PHE E 433
ASN E 437
SER E1237
ARG E1245
 None
 1.08A 6baaE-6c3pE:
31.0		 6baaE-6c3pE:
73.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
6c3p ATP-BINDING CASSETTE
SUB-FAMILY C MEMBER
8

(Homo sapiens) 		no annotation 6 ARG E 306
ILE E 381
PHE E 433
ASN E 437
LEU E 592
ARG E1245
 None
 1.09A 6baaE-6c3pE:
31.0		 6baaE-6c3pE:
73.15