SIMILAR PATTERNS OF AMINO ACIDS FOR 6B68_D_9F2D400_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1i35 PROTEIN KINASE BYR2

(Schizosaccharomyces
pombe) 		PF14847
(Ras_bdg_2) 		4 CYH A   8
ILE A  50
PRO A  81
THR A  12
 None
 1.44A 6b68D-1i35A:
0.0		 6b68D-1i35A:
18.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wwy THIOREDOXIN-LIKE
PROTEIN 1

(Homo sapiens) 		PF06201
(PITH) 		4 CYH A  35
ILE A 111
PRO A  71
THR A 150
 None
 1.19A 6b68D-1wwyA:
0.0		 6b68D-1wwyA:
16.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2dku KIAA1556 PROTEIN

(Homo sapiens) 		PF07679
(I-set) 		4 CYH A  30
ILE A  67
PRO A  56
THR A  16
 None
 1.38A 6b68D-2dkuA:
undetectable		 6b68D-2dkuA:
26.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2lv9 HISTONE-LYSINE
N-METHYLTRANSFERASE
MLL5

(Homo sapiens) 		PF00628
(PHD) 		4 CYH A 134
ILE A 144
PRO A 155
THR A 119
 None
 1.47A 6b68D-2lv9A:
undetectable		 6b68D-2lv9A:
18.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dms ISOCITRATE
DEHYDROGENASE [NADP]

(Burkholderia
pseudomallei) 		PF00180
(Iso_dh) 		4 CYH A 129
ILE A 133
PRO A 326
THR A 303
 None
 1.44A 6b68D-3dmsA:
0.0		 6b68D-3dmsA:
10.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vn9 DUAL SPECIFICITY
MITOGEN-ACTIVATED
PROTEIN KINASE
KINASE 6

(Homo sapiens) 		PF00069
(Pkinase) 		4 CYH A 196
ILE A 158
PRO A 182
THR A 112
 MG  A 402 ( 3.7A)
None
None
None
 1.43A 6b68D-3vn9A:
0.1		 6b68D-3vn9A:
12.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nwk HCV NS3 1A PROTEASE

(Hepacivirus C) 		PF02907
(Peptidase_S29) 		4 CYH A 145
ILE A  48
PRO A 142
THR A  98
 ZN  A 302 (-2.3A)
None
None
None
 1.37A 6b68D-4nwkA:
0.0		 6b68D-4nwkA:
18.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r31 URIDINE
PHOSPHORYLASE

(Actinobacillus
succinogenes) 		PF01048
(PNP_UDP_1) 		4 CYH A  75
ILE A  67
PRO A  70
THR A  49
 None
GOL  A 301 ( 4.2A)
None
None
 1.19A 6b68D-4r31A:
0.0		 6b68D-4r31A:
15.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5eqq NS3 PROTEASE

(Hepacivirus C) 		PF02907
(Peptidase_S29) 		4 CYH A1145
ILE A1048
PRO A1142
THR A1098
 ZN  A1202 (-2.3A)
None
None
None
 1.28A 6b68D-5eqqA:
0.0		 6b68D-5eqqA:
18.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w8q BIS3 BIPHENYL
SYNTHASE

(Malus domestica) 		no annotation 4 CYH A 185
ILE A 188
PRO A  98
THR A 338
 None
 1.17A 6b68D-5w8qA:
0.0		 6b68D-5w8qA:
20.20