SIMILAR PATTERNS OF AMINO ACIDS FOR 6B2W_A_AG2A401

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zbr CONSERVED
HYPOTHETICAL PROTEIN

(Porphyromonas
gingivalis) 		PF04371
(PAD_porph) 		6 ASP A  82
ASP A  87
TRP A 109
THR A 205
HIS A 208
GLN A 324
 None
 0.58A 6b2wA-1zbrA:
49.5		 6b2wA-1zbrA:
10.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zbr CONSERVED
HYPOTHETICAL PROTEIN

(Porphyromonas
gingivalis) 		PF04371
(PAD_porph) 		5 ASP A  82
ASP A 204
THR A 205
HIS A 208
GLN A 324
 None
 1.11A 6b2wA-1zbrA:
49.5		 6b2wA-1zbrA:
10.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ewo PUTATIVE AGMATINE
DEIMINASE

(Streptococcus
mutans) 		PF04371
(PAD_porph) 		6 ASP A  95
TRP A  97
ASP A 100
TRP A 123
THR A 219
HIS A 222
 None
 0.76A 6b2wA-2ewoA:
43.5		 6b2wA-2ewoA:
11.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jer AGMATINE DEIMINASE

(Enterococcus
faecalis) 		PF04371
(PAD_porph) 		6 ASP A  91
TRP A  93
ASP A  96
TRP A 119
THR A 215
HIS A 218
 None
AGT  A 357 ( 3.4A)
AGT  A 357 ( 3.3A)
AGT  A 357 ( 3.9A)
AGT  A 357 ( 4.3A)
None
 0.55A 6b2wA-2jerA:
43.7		 6b2wA-2jerA:
12.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jer AGMATINE DEIMINASE

(Enterococcus
faecalis) 		PF04371
(PAD_porph) 		5 ASP A 133
ASP A  96
TRP A 119
THR A 215
HIS A 218
 None
AGT  A 357 ( 3.3A)
AGT  A 357 ( 3.9A)
AGT  A 357 ( 4.3A)
None
 1.35A 6b2wA-2jerA:
43.7		 6b2wA-2jerA:
12.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h7k AGMATINE DEIMINASE

(Arabidopsis
thaliana) 		PF04371
(PAD_porph) 		7 ASP A  89
TRP A  91
ASP A  94
TRP A 125
ASP A 220
THR A 221
HIS A 224
 None
AGT  A 366 ( 3.6A)
AGT  A 366 ( 3.0A)
AGT  A 366 (-3.9A)
AGT  A 366 (-3.7A)
AGT  A 366 ( 4.5A)
AGT  A 366 ( 4.1A)
 0.76A 6b2wA-3h7kA:
44.9		 6b2wA-3h7kA:
14.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h7k AGMATINE DEIMINASE

(Arabidopsis
thaliana) 		PF04371
(PAD_porph) 		5 ASP A 139
ASP A  94
TRP A 125
THR A 221
HIS A 224
 None
AGT  A 366 ( 3.0A)
AGT  A 366 (-3.9A)
AGT  A 366 ( 4.5A)
AGT  A 366 ( 4.1A)
 1.43A 6b2wA-3h7kA:
44.9		 6b2wA-3h7kA:
14.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hvm AGMATINE DEIMINASE

(Helicobacter
pylori) 		PF04371
(PAD_porph) 		8 ASP A  79
TRP A  81
ASP A  84
TRP A 106
ASP A 198
THR A 199
HIS A 202
GLN A 318
 None
 0.66A 6b2wA-3hvmA:
49.7		 6b2wA-3hvmA:
13.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hvm AGMATINE DEIMINASE

(Helicobacter
pylori) 		PF04371
(PAD_porph) 		5 ASP A 115
ASP A  84
TRP A 106
THR A 199
HIS A 202
 None
 1.31A 6b2wA-3hvmA:
49.7		 6b2wA-3hvmA:
13.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wgx MOLINATE HYDROLASE

(Gulosibacter
molinativorax) 		PF01979
(Amidohydro_1) 		5 ASP A  71
ASP A 342
ASP A 112
THR A 113
ASN A 115
 None
MPD  A 502 (-2.7A)
None
MPD  A 502 ( 4.4A)
None
 1.44A 6b2wA-4wgxA:
0.0		 6b2wA-4wgxA:
10.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zwn MONOGLYCERIDE LIPASE

(Saccharomyces
cerevisiae) 		PF12146
(Hydrolase_4) 		5 ASP A 185
ASP A 251
THR A 252
HIS A 157
ASN A 254
 None
 1.49A 6b2wA-4zwnA:
0.0		 6b2wA-4zwnA:
16.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fpn HEAT SHOCK-RELATED
70 KDA PROTEIN 2

(Homo sapiens) 		PF00012
(HSP70) 		5 ASP A  80
ASP A  86
THR A 228
HIS A 229
SER A  85
 None
 1.47A 6b2wA-5fpnA:
0.1		 6b2wA-5fpnA:
10.35