SIMILAR PATTERNS OF AMINO ACIDS FOR 6AGG_Z_AG2Z503

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gdr GLUTATHIONE
S-TRANSFERASE

(Paraburkholderia
xenovorans) 		PF02798
(GST_N)
PF13410
(GST_C_2) 		4 GLU A  65
ASN A  47
VAL A  52
CYH A  54
 GSH  A 224 (-3.1A)
None
GSH  A 224 (-4.1A)
None
 1.40A 6aggZ-2gdrA:
0.0		 6aggZ-2gdrA:
17.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2lbc UBIQUITIN
CARBOXYL-TERMINAL
HYDROLASE 13

(Homo sapiens) 		PF00627
(UBA) 		4 GLU A  18
VAL A  24
CYH A  20
ARG A  21
 None
 1.36A 6aggZ-2lbcA:
0.0		 6aggZ-2lbcA:
19.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qby CELL DIVISION
CONTROL PROTEIN 6
HOMOLOG 3

(Sulfolobus
solfataricus) 		PF09079
(Cdc6_C)
PF13401
(AAA_22) 		4 GLU B 151
VAL B 102
CYH B  99
ARG B 100
 MG  B   7 ( 4.3A)
None
None
None
 1.43A 6aggZ-2qbyB:
0.0		 6aggZ-2qbyB:
11.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vbi PYRUVATE
DECARBOXYLASE

(Acetobacter
pasteurianus) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		4 GLU A  58
ASN A 421
VAL A 381
ARG A  62
 None
 1.46A 6aggZ-2vbiA:
0.0		 6aggZ-2vbiA:
8.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vpw NRFC PROTEIN

(Thermus
thermophilus) 		PF13247
(Fer4_11) 		4 GLU B  26
VAL B 132
CYH B 131
ARG B 122
 None
None
SF4  B1195 (-2.2A)
None
 0.89A 6aggZ-2vpwB:
0.0		 6aggZ-2vpwB:
20.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3au7 PUTATIVE
UNCHARACTERIZED
PROTEIN

(Archaeoglobus
fulgidus) 		PF01336
(tRNA_anti-codon)
PF08489
(DUF1743) 		5 GLU A 159
ASN A 194
VAL A 203
CYH A 204
ARG A 217
 AG2  A7011 ( 4.1A)
AG2  A7011 (-4.5A)
AG2  A7011 (-4.5A)
None
AG2  A7011 (-3.5A)
 0.34A 6aggZ-3au7A:
51.9		 6aggZ-3au7A:
80.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bhh CALCIUM/CALMODULIN-D
EPENDENT PROTEIN
KINASE TYPE II BETA
CHAIN

(Homo sapiens) 		PF00069
(Pkinase) 		4 GLU A  18
VAL A  32
CYH A  31
ARG A  30
 None
 1.28A 6aggZ-3bhhA:
0.0		 6aggZ-3bhhA:
12.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fwx PEPTIDE DEFORMYLASE

(Vibrio cholerae) 		PF01327
(Pep_deformylase) 		4 GLU A  89
VAL A 131
CYH A 130
ARG A 103
 None
 1.31A 6aggZ-3fwxA:
0.0		 6aggZ-3fwxA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h77 PQS BIOSYNTHETIC
ENZYME

(Pseudomonas
aeruginosa) 		PF08541
(ACP_syn_III_C)
PF08545
(ACP_syn_III) 		4 GLU A 140
ASN A  79
VAL A  78
CYH A 138
 None
 1.36A 6aggZ-3h77A:
0.0		 6aggZ-3h77A:
11.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h77 PQS BIOSYNTHETIC
ENZYME

(Pseudomonas
aeruginosa) 		PF08541
(ACP_syn_III_C)
PF08545
(ACP_syn_III) 		4 GLU A 140
ASN A  79
VAL A 137
CYH A 138
 None
 1.29A 6aggZ-3h77A:
0.0		 6aggZ-3h77A:
11.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hqx UPF0345 PROTEIN
ACIAD0356

(Acinetobacter
sp. ADP1) 		PF06865
(DUF1255) 		4 GLU A 107
VAL A 103
CYH A 104
ARG A  57
 None
 1.25A 6aggZ-3hqxA:
undetectable		 6aggZ-3hqxA:
23.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rwl CYTOCHROME P450
ALKANE HYDROXYLASE 1
CYP153A7

(Sphingopyxis
macrogoltabida) 		PF00067
(p450) 		4 ASN A 369
VAL A 367
CYH A 366
ARG A 365
 None
HEM  A 417 (-4.8A)
HEM  A 417 (-2.2A)
None
 1.19A 6aggZ-3rwlA:
undetectable		 6aggZ-3rwlA:
12.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f2g ORNITHINE
CARBAMOYLTRANSFERASE
1

(Burkholderia
thailandensis) 		PF00185
(OTCace)
PF02729
(OTCace_N) 		4 GLU A 119
ASN A 120
VAL A  90
ARG A 116
 None
None
PO4  A 406 (-4.5A)
None
 1.42A 6aggZ-4f2gA:
undetectable		 6aggZ-4f2gA:
15.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g6z GLUTAMATE-TRNA
LIGASE

(Burkholderia
thailandensis) 		PF00749
(tRNA-synt_1c) 		4 GLU A  44
VAL A 193
CYH A 190
ARG A  42
 GLU  A 501 (-3.7A)
None
None
None
 1.08A 6aggZ-4g6zA:
undetectable		 6aggZ-4g6zA:
10.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o1o RIBONUCLEASE L

(Sus scrofa) 		PF00069
(Pkinase)
PF06479
(Ribonuc_2-5A)
PF12796
(Ank_2)
PF13857
(Ank_5) 		4 GLU A  70
ASN A 102
VAL A 103
ARG A 104
 None
 1.49A 6aggZ-4o1oA:
undetectable		 6aggZ-4o1oA:
8.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4trg SIDC

(Legionella
pneumophila) 		no annotation 4 GLU A  13
ASN A 506
VAL A 508
ARG A 108
 None
 1.24A 6aggZ-4trgA:
undetectable		 6aggZ-4trgA:
11.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5g4g VCP-LIKE ATPASE

(Thermoplasma
acidophilum) 		PF00004
(AAA)
PF02359
(CDC48_N)
PF02933
(CDC48_2) 		4 GLU A 182
ASN A  76
CYH A  77
ARG A 186
 None
 1.48A 6aggZ-5g4gA:
undetectable		 6aggZ-5g4gA:
7.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ip7 DNA-DIRECTED RNA
POLYMERASE II
SUBUNIT RPB9

(Saccharomyces
cerevisiae) 		PF01096
(TFIIS_C)
PF02150
(RNA_POL_M_15KD) 		4 GLU I  82
ASN I  83
VAL I 102
CYH I 103
 None
None
None
ZN  I 202 (-2.4A)
 1.49A 6aggZ-5ip7I:
undetectable		 6aggZ-5ip7I:
22.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5oay TRANSCRIPTIONAL
REGULATOR WHIB1

(Mycobacterium
tuberculosis) 		no annotation 4 GLU A  67
ASN A  38
VAL A  36
CYH A  37
 None
None
None
SF4  A 101 (-2.2A)
 1.46A 6aggZ-5oayA:
undetectable		 6aggZ-5oayA:
15.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wme CAPSID ASSEMBLY
SCAFFOLDING
PROTEIN,MYOSIN-7

(Homo sapiens;
Bacillus virus
phi29) 		PF11418
(Scaffolding_pro) 		4 GLU A1752
VAL A1745
CYH A1748
ARG A1749
 None
 1.41A 6aggZ-5wmeA:
undetectable		 6aggZ-5wmeA:
16.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wmm NRPS

(Micromonospora
sp. ML1) 		no annotation 4 GLU A 162
ASN A 186
VAL A 366
ARG A 185
 None
 1.40A 6aggZ-5wmmA:
undetectable		 6aggZ-5wmmA:
26.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yba PEPTIDYL-PROLYL
CIS-TRANS ISOMERASE

(Trichomonas
vaginalis) 		no annotation 4 GLU A  24
ASN A  27
VAL A  30
ARG A   4
 None
 1.49A 6aggZ-5ybaA:
undetectable		 6aggZ-5ybaA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bm7 INACTIVE
S-ADENOSYLMETHIONINE
DECARBOXYLASE
PROZYME

(Trypanosoma
brucei) 		no annotation 4 GLU E  38
ASN E 199
VAL E 200
ARG E  99
 None
 1.34A 6aggZ-6bm7E:
undetectable		 6aggZ-6bm7E:
24.47