SIMILAR PATTERNS OF AMINO ACIDS FOR 6AG0_A_ACRA607_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1htq GLUTAMINE SYNTHETASE

(Mycobacterium
tuberculosis) 		PF00120
(Gln-synt_C)
PF03951
(Gln-synt_N) 		4 ARG A 143
SER A 142
ASP A 141
ASN A 145
 None
 1.11A 6ag0A-1htqA:
undetectable		 6ag0A-1htqA:
12.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1n76 LACTOFERRIN

(Homo sapiens) 		PF00405
(Transferrin) 		4 ARG A 442
SER A 444
ASP A 445
ASN A 538
 None
 1.26A 6ag0A-1n76A:
0.0		 6ag0A-1n76A:
7.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qbg NAD(P)H
DEHYDROGENASE
[QUINONE] 1

(Homo sapiens) 		PF02525
(Flavodoxin_2) 		4 ARG A 118
SER A  51
ASP A  54
ASN A  47
 None
 0.87A 6ag0A-1qbgA:
1.8		 6ag0A-1qbgA:
13.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vd2 PROTEIN KINASE C,
IOTA TYPE

(Homo sapiens) 		PF00564
(PB1) 		4 ARG A  46
SER A  50
ASP A  47
ASN A  53
 None
 1.34A 6ag0A-1vd2A:
undetectable		 6ag0A-1vd2A:
23.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w7c LYSYL OXIDASE

(Komagataella
pastoris) 		PF01179
(Cu_amine_oxid)
PF02727
(Cu_amine_oxidN2)
PF09248
(DUF1965) 		4 ARG A 355
SER A 354
ASP A 356
ASN A 405
 None
 1.48A 6ag0A-1w7cA:
0.0		 6ag0A-1w7cA:
8.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3g0o 3-HYDROXYISOBUTYRATE
DEHYDROGENASE

(Salmonella
enterica) 		PF03446
(NAD_binding_2)
PF14833
(NAD_binding_11) 		4 ARG A 226
SER A 286
ASP A 285
ASN A 225
 TLA  A 401 (-2.9A)
None
None
TLA  A 401 ( 4.6A)
 1.12A 6ag0A-3g0oA:
1.2		 6ag0A-3g0oA:
16.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h77 PQS BIOSYNTHETIC
ENZYME

(Pseudomonas
aeruginosa) 		PF08541
(ACP_syn_III_C)
PF08545
(ACP_syn_III) 		4 ARG A 153
SER A 149
ASP A 150
ASN A 154
 COW  A 350 (-3.6A)
None
None
COW  A 350 (-3.0A)
 1.32A 6ag0A-3h77A:
0.3		 6ag0A-3h77A:
13.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q0i METHIONYL-TRNA
FORMYLTRANSFERASE

(Vibrio cholerae) 		PF00551
(Formyl_trans_N)
PF02911
(Formyl_trans_C) 		4 ARG A 117
SER A 127
ASP A 132
ASN A 203
 None
 1.13A 6ag0A-3q0iA:
0.6		 6ag0A-3q0iA:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wdj TYPE I PULLULANASE

(Anoxybacillus
sp. LM18-11) 		PF00128
(Alpha-amylase)
PF02922
(CBM_48) 		4 ARG A 475
SER A 481
ASP A 476
ASN A 527
 MTT  A 801 (-3.1A)
None
None
MTT  A 801 (-3.0A)
 1.34A 6ag0A-3wdjA:
22.0		 6ag0A-3wdjA:
8.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zqj UVRABC SYSTEM
PROTEIN A

(Mycobacterium
tuberculosis) 		PF00005
(ABC_tran) 		4 ARG A 619
SER A 911
ASP A 912
ASN A 889
 None
 1.46A 6ag0A-3zqjA:
undetectable		 6ag0A-3zqjA:
6.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4iss ALLOPHANATE
HYDROLASE

(Kluyveromyces
lactis) 		PF01425
(Amidase) 		4 ARG A 420
SER A 421
ASP A 422
ASN A 271
 None
 0.94A 6ag0A-4issA:
undetectable		 6ag0A-4issA:
9.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4uzu ALPHA-AMYLASE

(Geobacillus
stearothermophilus) 		PF00128
(Alpha-amylase)
PF09154
(DUF1939) 		4 ARG A 454
SER A 455
ASP A 456
ASN A 471
 None
 0.60A 6ag0A-4uzuA:
67.2		 6ag0A-4uzuA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z3y BENZOYL-COA
REDUCTASE, PUTATIVE

(Geobacter
metallireducens) 		PF01314
(AFOR_C)
PF02730
(AFOR_N) 		4 ARG A 186
SER A 185
ASP A 352
ASN A 456
 None
MTE  A 703 (-3.0A)
MTE  A 703 (-3.7A)
None
 1.20A 6ag0A-4z3yA:
undetectable		 6ag0A-4z3yA:
8.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ztb PROTEASE NSP2

(Chikungunya
virus) 		PF01707
(Peptidase_C9) 		4 ARG A 262
SER A  62
ASP A  61
ASN A  49
 None
 1.34A 6ag0A-4ztbA:
undetectable		 6ag0A-4ztbA:
16.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f3y UNCONVENTIONAL
MYOSIN-VIIB

(Mus musculus) 		PF00784
(MyTH4) 		4 ARG A1151
SER A1194
ASP A1193
ASN A1155
 None
 1.29A 6ag0A-5f3yA:
undetectable		 6ag0A-5f3yA:
8.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h2t TREHALOSE SYNTHASE

(Thermomonospora
curvata) 		no annotation 4 ARG A 362
SER A 410
ASP A 401
ASN A 357
 None
 1.48A 6ag0A-5h2tA:
20.3		 6ag0A-5h2tA:
8.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hyz GRAS FAMILY
TRANSCRIPTION FACTOR
CONTAINING PROTEIN,
EXPRESSED

(Oryza sativa) 		PF03514
(GRAS) 		4 ARG A 510
SER A 421
ASP A 420
ASN A 450
 None
 1.48A 6ag0A-5hyzA:
undetectable		 6ag0A-5hyzA:
12.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i8i UREA AMIDOLYASE

(Kluyveromyces
lactis) 		PF00289
(Biotin_carb_N)
PF01425
(Amidase)
PF02626
(CT_A_B)
PF02682
(CT_C_D)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		4 ARG A 420
SER A 421
ASP A 422
ASN A 271
 None
 0.92A 6ag0A-5i8iA:
undetectable		 6ag0A-5i8iA:
3.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6amw TYROSINE-PROTEIN
KINASE ABL1

(Homo sapiens) 		PF00017
(SH2)
PF00018
(SH3_1) 		4 ARG A  50
SER A  54
ASP A  55
ASN A  83
 None
 1.25A 6ag0A-6amwA:
undetectable		 6ag0A-6amwA:
16.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f0k FE-S-CLUSTER-CONTAIN
ING HYDROGENASE

(Rhodothermus
marinus) 		no annotation 4 ARG B 795
SER B 791
ASP B 792
ASN B 796
 None
None
HEC  A 302 ( 4.6A)
None
 1.15A 6ag0A-6f0kB:
undetectable		 6ag0A-6f0kB:
26.32