SIMILAR PATTERNS OF AMINO ACIDS FOR 5ZOV_B_ASCB501

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1c7o CYSTALYSIN

(Treponema
denticola) 		PF00155
(Aminotran_1_2) 		5 PRO A 212
ILE A 322
GLN A 303
ALA A 373
ILE A 296
 None
 1.28A 5zovB-1c7oA:
0.0		 5zovB-1c7oA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ece ENDOCELLULASE E1

(Acidothermus
cellulolyticus) 		PF00150
(Cellulase) 		5 TYR A 240
HIS A 238
HIS A 116
GLN A 123
ASP A 114
 BGC  A 402 ( 4.7A)
None
BGC  A 403 ( 4.2A)
BGC  A 403 (-3.4A)
None
 1.08A 5zovB-1eceA:
0.0		 5zovB-1eceA:
22.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1idu VANADIUM
CHLOROPEROXIDASE

(Curvularia
inaequalis) 		PF01569
(PAP2) 		5 ILE A 533
ASP A 506
ALA A 503
ILE A 557
MET A 483
 None
 1.36A 5zovB-1iduA:
0.0		 5zovB-1iduA:
19.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z48 PROBABLE
NADH-DEPENDENT
FLAVIN
OXIDOREDUCTASE YQJM

(Bacillus
subtilis) 		PF00724
(Oxidored_FMN) 		5 PRO A 331
TYR A 334
GLN A 333
GLN A  95
ALA A  43
 None
 1.39A 5zovB-1z48A:
0.0		 5zovB-1z48A:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2oa2 BH2720 PROTEIN

(Bacillus
halodurans) 		PF07883
(Cupin_2) 		5 HIS A 274
HIS A 208
GLN A 213
ARG A 181
ILE A 203
 None
 1.49A 5zovB-2oa2A:
undetectable		 5zovB-2oa2A:
13.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2z1q ACYL-COA
DEHYDROGENASE

(Thermus
thermophilus) 		PF00441
(Acyl-CoA_dh_1)
PF02770
(Acyl-CoA_dh_M)
PF02771
(Acyl-CoA_dh_N) 		5 PRO A 409
ILE A 485
ASP A 488
ALA A 491
ILE A 408
 None
 1.44A 5zovB-2z1qA:
0.0		 5zovB-2z1qA:
22.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3b6u KINESIN-LIKE PROTEIN
KIF3B

(Homo sapiens) 		PF00225
(Kinesin) 		5 TYR A 138
HIS A 129
HIS A 125
ASP A  82
ILE A 223
 None
 1.48A 5zovB-3b6uA:
undetectable		 5zovB-3b6uA:
20.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e15 GLUCOSE-6-PHOSPHATE
1-DEHYDROGENASE

(Plasmodium
vivax) 		PF01182
(Glucosamine_iso) 		5 TYR A  68
ILE A  88
ASP A  90
ALA A 165
ILE A 155
 None
 1.34A 5zovB-3e15A:
0.0		 5zovB-3e15A:
19.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f7m ALKALINE SERINE
PROTEASE VER112

(Lecanicillium
psalliotae) 		PF00082
(Peptidase_S8) 		5 PRO A 275
ILE A 212
ASP A 216
ALA A 219
MET A 235
 None
 1.38A 5zovB-3f7mA:
0.0		 5zovB-3f7mA:
20.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fse TWO-DOMAIN PROTEIN
CONTAINING
DJ-1/THIJ/PFPI-LIKE
AND FERRITIN-LIKE
DOMAINS

(Trichormus
variabilis) 		PF01965
(DJ-1_PfpI)
PF09537
(DUF2383) 		5 PRO A  84
ILE A 134
GLN A 115
ALA A 128
ILE A  78
 None
CSX  A 111 ( 4.9A)
None
None
None
 1.40A 5zovB-3fseA:
undetectable		 5zovB-3fseA:
22.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b9p TYPE 3A
CELLULOSE-BINDING
DOMAIN PROTEIN

(Ruminiclostridium
thermocellum) 		PF00942
(CBM_3) 		5 PRO A  25
ILE A  15
GLN A  24
ALA A 116
ILE A 111
 None
 1.45A 5zovB-4b9pA:
undetectable		 5zovB-4b9pA:
17.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g3m RIBOFLAVIN
BIOSYNTHESIS PROTEIN
RIBD

(Bacillus
subtilis) 		PF00383
(dCMP_cyt_deam_1)
PF01872
(RibD_C) 		5 PRO A 214
ILE A 236
GLN A 213
ARG A 206
ILE A 189
 None
None
None
AI9  A 402 (-2.8A)
None
 1.19A 5zovB-4g3mA:
undetectable		 5zovB-4g3mA:
22.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h7n ALDEHYDE
DEHYDROGENASE

(Trichormus
variabilis) 		PF00171
(Aldedh) 		5 TYR A 270
ILE A 266
ARG A 268
ALA A 410
ILE A 237
 None
 1.16A 5zovB-4h7nA:
undetectable		 5zovB-4h7nA:
22.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ifr 2-AMINO-3-CARBOXYMUC
ONATE 6-SEMIALDEHYDE
DECARBOXYLASE

(Pseudomonas
fluorescens) 		PF04909
(Amidohydro_2) 		5 PRO A  81
GLN A 145
HIS A   9
ASP A 268
ALA A 270
 None
None
ZN  A 401 (-3.5A)
None
None
 1.14A 5zovB-4ifrA:
undetectable		 5zovB-4ifrA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k35 GLYCOSIDE HYDROLASE
FAMILY 81
ENDO-BETA-1,3-GLUCAN
ASE

(Rhizomucor
miehei) 		PF03639
(Glyco_hydro_81) 		5 PRO A  63
ILE A  82
ALA A 166
ILE A 157
MET A 161
 None
 1.14A 5zovB-4k35A:
undetectable		 5zovB-4k35A:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mln PREDICTED HD
PHOSPHOHYDROLASE
PHNZ

(uncultured
bacterium
HF130_AEPn_1) 		PF01966
(HD) 		5 HIS A 104
HIS A  62
ARG A 158
ASP A  59
MET A  72
 FE  A 202 ( 3.3A)
ODV  A 203 (-4.1A)
ODV  A 203 (-2.8A)
ODV  A 203 (-2.3A)
None
 1.40A 5zovB-4mlnA:
undetectable		 5zovB-4mlnA:
16.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4rp8 ASCORBATE-SPECIFIC
PERMEASE IIC
COMPONENT ULAA

(Escherichia
coli) 		PF03611
(EIIC-GAT) 		10 TYR A  87
HIS A 135
ILE A 136
GLN A 139
HIS A 194
GLN A 195
ASP A 314
ALA A 316
ILE A 358
MET A 410
 ASC  A 501 (-3.9A)
ASC  A 501 (-4.1A)
None
ASC  A 501 (-2.5A)
ASC  A 501 (-4.1A)
ASC  A 501 (-4.0A)
ASC  A 501 (-2.7A)
ASC  A 501 ( 3.7A)
ASC  A 501 ( 4.9A)
ASC  A 501 (-4.1A)
 0.33A 5zovB-4rp8A:
44.1		 5zovB-4rp8A:
62.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wsh UROPORPHYRINOGEN
DECARBOXYLASE

(Pseudomonas
aeruginosa) 		PF01208
(URO-D) 		5 ILE A 247
GLN A 290
GLN A 206
ALA A 202
ILE A  74
 None
 1.43A 5zovB-4wshA:
undetectable		 5zovB-4wshA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4x90 GROUP XV
PHOSPHOLIPASE A2

(Homo sapiens) 		PF02450
(LCAT) 		5 PRO A 290
HIS A 347
GLN A 345
ASP A 184
ALA A 181
 None
CL  A 406 ( 4.0A)
PO4  A 407 (-4.3A)
None
None
 1.48A 5zovB-4x90A:
undetectable		 5zovB-4x90A:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zr8 UROPORPHYRINOGEN
DECARBOXYLASE

(Acinetobacter
baumannii) 		PF01208
(URO-D) 		5 ILE A 246
GLN A 289
GLN A 205
ALA A 201
ILE A  73
 None
None
None
None
CL  A 404 ( 4.4A)
 1.46A 5zovB-4zr8A:
undetectable		 5zovB-4zr8A:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hql RIBULOSE
BISPHOSPHATE
CARBOXYLASE

(Rhodopseudomonas
palustris) 		PF00016
(RuBisCO_large)
PF02788
(RuBisCO_large_N) 		5 HIS A 286
ILE A 367
HIS A 322
ALA A 290
ILE A 165
 KCX  A 192 ( 3.5A)
None
KCX  A 192 (-3.8A)
None
KCX  A 192 (-3.7A)
 1.17A 5zovB-5hqlA:
undetectable		 5zovB-5hqlA:
24.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mac RIBULOSE-1,5-BISPHOS
PHATE
CARBOXYLASE-OXYGENAS
E TYPE III

(Methanococcoides
burtonii) 		PF00016
(RuBisCO_large)
PF02788
(RuBisCO_large_N) 		5 HIS A 286
ILE A 397
HIS A 322
ALA A 290
ILE A 165
 KCX  A 193 ( 4.3A)
None
CAP  A 501 (-4.0A)
None
CAP  A 501 (-3.7A)
 1.20A 5zovB-5macA:
undetectable		 5zovB-5macA:
24.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vad BIFUNCTIONAL
GLUTAMATE/PROLINE--T
RNA LIGASE

(Homo sapiens) 		PF00587
(tRNA-synt_2b)
PF03129
(HGTP_anticodon)
PF09180
(ProRS-C_1) 		5 PRO A1160
TYR A1040
ASP A1026
ALA A1018
ILE A1032
 None
 1.49A 5zovB-5vadA:
undetectable		 5zovB-5vadA:
23.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5zov -

(-) 		no annotation 12 PRO A  86
TYR A  87
HIS A 135
ILE A 136
GLN A 139
HIS A 194
GLN A 195
ARG A 288
ASP A 314
ALA A 316
ILE A 358
MET A 415
 None
ASC  A 501 (-4.0A)
ASC  A 501 (-4.0A)
None
ASC  A 501 (-3.1A)
ASC  A 501 (-4.0A)
ASC  A 501 (-4.2A)
ASC  A 501 (-3.0A)
ASC  A 501 (-2.7A)
ASC  A 501 (-3.6A)
ASC  A 501 ( 4.9A)
ASC  A 501 ( 4.6A)
 0.33A 5zovB-5zovA:
69.7		 5zovB-5zovA:
100.00