SIMILAR PATTERNS OF AMINO ACIDS FOR 5ZBD_B_TRPB501_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ct9 ASPARAGINE
SYNTHETASE B

(Escherichia
coli) 		PF00733
(Asn_synthase)
PF13537
(GATase_7) 		5 TYR A 191
HIS A 139
TYR A 190
ASP A 115
GLY A 119
 None
 1.47A 5zbdB-1ct9A:
0.0		 5zbdB-1ct9A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j31 HYPOTHETICAL PROTEIN
PH0642

(Pyrococcus
horikoshii) 		PF00795
(CN_hydrolase) 		5 ALA A  88
LEU A  16
TYR A  20
ASP A  45
VAL A  59
 None
 1.40A 5zbdB-1j31A:
0.0		 5zbdB-1j31A:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kqo NICOTINAMIDE
MONONUCLEOTIDE
ADENYLYL TRANSFERASE

(Homo sapiens) 		PF01467
(CTP_transf_like) 		5 ARG A  40
TYR A  34
ALA A  31
HIS A 211
VAL A   9
 None
 1.25A 5zbdB-1kqoA:
0.0		 5zbdB-1kqoA:
18.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1x0u HYPOTHETICAL
METHYLMALONYL-COA
DECARBOXYLASE ALPHA
SUBUNIT

(Sulfurisphaera
tokodaii) 		PF01039
(Carboxyl_trans) 		5 ARG A 140
ALA A  43
HIS A 112
ASP A 100
GLY A 137
 None
 1.31A 5zbdB-1x0uA:
0.1		 5zbdB-1x0uA:
21.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ytk NICOTINATE
PHOSPHORIBOSYLTRANSF
ERASE FROM
THERMOPLASMA
ACIDOPHILUM

(Thermoplasma
acidophilum) 		PF01729
(QRPTase_C) 		5 ARG A 153
ALA A  73
LEU A  61
TYR A 371
VAL A  60
 None
 1.33A 5zbdB-1ytkA:
0.0		 5zbdB-1ytkA:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cvo PUTATIVE
SEMIALDEHYDE
DEHYDROGENASE

(Oryza sativa) 		PF01118
(Semialdhyde_dh)
PF02774
(Semialdhyde_dhC) 		5 ALA A 260
LEU A 304
TYR A 273
VAL A 250
GLY A 252
 None
 1.44A 5zbdB-2cvoA:
undetectable		 5zbdB-2cvoA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nvv ACETYL-COA
HYDROLASE/TRANSFERAS
E FAMILY PROTEIN

(Porphyromonas
gingivalis) 		PF02550
(AcetylCoA_hydro)
PF13336
(AcetylCoA_hyd_C) 		5 TYR A 335
LEU A 173
ASP A 172
VAL A 142
GLY A 143
 TYR  A 335 ( 1.3A)
LEU  A 173 ( 0.6A)
ASP  A 172 ( 0.6A)
VAL  A 142 ( 0.6A)
GLY  A 143 ( 0.0A)
 1.43A 5zbdB-2nvvA:
0.0		 5zbdB-2nvvA:
21.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nyf NOSTOC PUNCTIFORME
PHENYLALANINE
AMMONIA LYASE

(Nostoc
punctiforme) 		PF00221
(Lyase_aromatic) 		5 ARG A  43
ALA A 244
TYR A 237
VAL A 556
GLY A 553
 None
 1.48A 5zbdB-2nyfA:
undetectable		 5zbdB-2nyfA:
22.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pff FATTY ACID SYNTHASE
SUBUNIT ALPHA

(Saccharomyces
cerevisiae) 		PF00106
(adh_short)
PF00109
(ketoacyl-synt)
PF02801
(Ketoacyl-synt_C) 		5 ALA A1393
LEU A1661
TYR A1662
VAL A1020
GLY A1402
 None
 1.25A 5zbdB-2pffA:
2.1		 5zbdB-2pffA:
12.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a98 DEDICATOR OF
CYTOKINESIS PROTEIN
2

(Homo sapiens) 		PF07653
(SH3_2)
PF16172
(DOCK_N) 		5 ALA A  15
LEU A  49
ASP A  33
VAL A  35
GLY A  47
 None
 1.43A 5zbdB-3a98A:
undetectable		 5zbdB-3a98A:
19.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ab7 PUTATIVE
UNCHARACTERIZED
PROTEIN TTHA0350

(Thermus
thermophilus) 		PF00582
(Usp) 		5 ARG A 179
ALA A 239
LEU A 208
VAL A 185
GLY A 184
 ARG  A 179 ( 0.6A)
ALA  A 239 ( 0.0A)
LEU  A 208 ( 0.6A)
VAL  A 185 ( 0.6A)
GLY  A 184 ( 0.0A)
 1.23A 5zbdB-3ab7A:
undetectable		 5zbdB-3ab7A:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ixw HEMOCYANIN AA6 CHAIN

(Androctonus
australis) 		PF00372
(Hemocyanin_M)
PF03722
(Hemocyanin_N)
PF03723
(Hemocyanin_C) 		5 ALA A  50
LEU A 258
ASP A 260
VAL A 326
GLY A 324
 None
 1.30A 5zbdB-3ixwA:
undetectable		 5zbdB-3ixwA:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kdj PROTEIN PHOSPHATASE
2C 56

(Arabidopsis
thaliana) 		PF00481
(PP2C) 		5 LEU B 320
TYR B 319
ASP B 317
VAL B 305
GLY B 307
 None
 1.43A 5zbdB-3kdjB:
undetectable		 5zbdB-3kdjB:
21.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ksr PUTATIVE SERINE
HYDROLASE

(Xanthomonas
campestris) 		PF00326
(Peptidase_S9) 		5 ALA A  47
HIS A  42
LEU A 232
VAL A 105
GLY A 106
 None
 1.10A 5zbdB-3ksrA:
undetectable		 5zbdB-3ksrA:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n6r PROPIONYL-COA
CARBOXYLASE, BETA
SUBUNIT

(Roseobacter
denitrificans) 		PF01039
(Carboxyl_trans) 		5 ARG B 165
ALA B  66
HIS B 137
ASP B 125
GLY B 162
 None
 1.37A 5zbdB-3n6rB:
undetectable		 5zbdB-3n6rB:
25.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nrd HISTIDINE TRIAD
(HIT) PROTEIN

(Sinorhizobium
meliloti) 		PF01230
(HIT) 		5 HIS A  94
LEU A  10
ASP A  13
VAL A  88
GLY A  85
 SO4  A 207 (-3.9A)
GOL  A 203 (-4.6A)
GOL  A 203 (-3.2A)
GOL  A 203 ( 4.4A)
SO4  A 207 (-3.2A)
 1.47A 5zbdB-3nrdA:
undetectable		 5zbdB-3nrdA:
15.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ujk PROTEIN PHOSPHATASE
2C 77

(Arabidopsis
thaliana) 		PF00481
(PP2C) 		5 LEU A 310
TYR A 309
ASP A 307
VAL A 295
GLY A 297
 None
 1.41A 5zbdB-3ujkA:
undetectable		 5zbdB-3ujkA:
23.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3w5n PUTATIVE
RHAMNOSIDASE

(Streptomyces
avermitilis) 		PF05592
(Bac_rhamnosid)
PF08531
(Bac_rhamnosid_N)
PF17389
(Bac_rhamnosid6H)
PF17390
(Bac_rhamnosid_C) 		5 TYR A 329
ALA A 374
LEU A 321
VAL A 338
GLY A 339
 None
 1.37A 5zbdB-3w5nA:
undetectable		 5zbdB-3w5nA:
18.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wsy SORTILIN-RELATED
RECEPTOR

(Homo sapiens) 		PF15901
(Sortilin_C)
PF15902
(Sortilin-Vps10) 		5 ALA A 121
HIS A 608
LEU A  98
ASP A 100
GLY A 601
 None
 1.45A 5zbdB-3wsyA:
undetectable		 5zbdB-3wsyA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4arc LEUCINE--TRNA LIGASE

(Escherichia
coli) 		PF00133
(tRNA-synt_1)
PF08264
(Anticodon_1)
PF13603
(tRNA-synt_1_2) 		5 ALA A 560
HIS A 537
LEU A  38
TYR A 499
GLY A 529
 None
LEU  A1001 (-3.6A)
None
None
None
 1.29A 5zbdB-4arcA:
undetectable		 5zbdB-4arcA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eh1 FLAVOHEMOPROTEIN

(Vibrio cholerae) 		PF00175
(NAD_binding_1)
PF00970
(FAD_binding_6) 		5 TYR A 206
LEU A 137
TYR A 111
VAL A 145
GLY A 144
 None
None
None
None
GOL  A 306 ( 4.2A)
 1.46A 5zbdB-4eh1A:
undetectable		 5zbdB-4eh1A:
20.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hbc ANTIGEN BINDING
FRAGMENT,
IMMUNOGLOBULIN IGG -
LIGHT CHAIN

(Oryctolagus
cuniculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 ALA L  81
LEU L  78
ASP L  82
VAL L 108
GLY L 110
 None
 1.47A 5zbdB-4hbcL:
undetectable		 5zbdB-4hbcL:
17.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4is2 BILE ACID 3-ALPHA
HYDROXYSTEROID
DEHYDROGENASE

([Clostridium]
scindens) 		PF00106
(adh_short) 		5 ARG A 177
TYR A 128
ALA A 127
LEU A 171
VAL A 182
 None
 1.36A 5zbdB-4is2A:
3.8		 5zbdB-4is2A:
23.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oic PROBABLE PROTEIN
PHOSPHATASE 2C 6

(Oryza sativa) 		PF00481
(PP2C) 		5 LEU B 359
TYR B 358
ASP B 356
VAL B 344
GLY B 346
 None
 1.35A 5zbdB-4oicB:
undetectable		 5zbdB-4oicB:
20.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ol9 PUTATIVE
2-DEHYDROPANTOATE
2-REDUCTASE

(Mycobacterium
tuberculosis) 		PF02558
(ApbA)
PF08546
(ApbA_C) 		5 ALA A 249
LEU A 257
ASP A 250
VAL A 188
GLY A 185
 None
None
NAP  A 301 ( 4.8A)
None
None
 1.21A 5zbdB-4ol9A:
undetectable		 5zbdB-4ol9A:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p48 ANTIBODY SCFV 180

(Gallus gallus) 		PF07686
(V-set) 		5 LEU A 211
TYR A 222
ASP A 218
VAL A 192
GLY A 189
 None
 1.39A 5zbdB-4p48A:
undetectable		 5zbdB-4p48A:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4raj HEME OXYGENASE

(Chlamydomonas
reinhardtii) 		PF01126
(Heme_oxygenase) 		5 ALA A 172
LEU A  54
TYR A  50
ASP A  99
GLY A 152
 None
 1.13A 5zbdB-4rajA:
undetectable		 5zbdB-4rajA:
20.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5crl MERCURIC RESISTANCE
OPERON REGULATORY
PROTEIN

(Pseudomonas
aeruginosa) 		PF00376
(MerR)
PF09278
(MerR-DNA-bind) 		5 ARG A  25
TYR A  46
LEU A  33
ASP A  50
VAL A  54
 None
 1.21A 5zbdB-5crlA:
undetectable		 5zbdB-5crlA:
16.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ihr PROBABLE
BETA-GALACTOSIDASE A

(Aspergillus
niger) 		PF01301
(Glyco_hydro_35)
PF10435
(BetaGal_dom2)
PF13363
(BetaGal_dom3)
PF13364
(BetaGal_dom4_5) 		5 TYR A 215
TYR A 201
ASP A 212
VAL A 208
GLY A 809
 None
 1.05A 5zbdB-5ihrA:
undetectable		 5zbdB-5ihrA:
18.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jjc CYSTEINE SYNTHASE

(Brucella
abortus) 		PF00291
(PALP) 		5 ALA A 212
LEU A 206
TYR A 218
VAL A 182
GLY A 185
 None
None
None
LLP  A  42 ( 4.0A)
LLP  A  42 ( 3.4A)
 0.96A 5zbdB-5jjcA:
undetectable		 5zbdB-5jjcA:
24.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jjc CYSTEINE SYNTHASE

(Brucella
abortus) 		PF00291
(PALP) 		5 ALA A 212
TYR A 218
ASP A 208
VAL A 182
GLY A 185
 None
None
None
LLP  A  42 ( 4.0A)
LLP  A  42 ( 3.4A)
 1.37A 5zbdB-5jjcA:
undetectable		 5zbdB-5jjcA:
24.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mpd 26S PROTEASOME
REGULATORY SUBUNIT
RPN7

(Saccharomyces
cerevisiae) 		PF01399
(PCI)
PF10602
(RPN7) 		5 LEU R 364
TYR R 338
ASP R 367
VAL R 359
GLY R 358
 None
 1.44A 5zbdB-5mpdR:
undetectable		 5zbdB-5mpdR:
20.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ot4 INTERAPTIN

(Legionella
pneumophila) 		no annotation 5 ALA A 743
LEU A 791
ASP A 841
VAL A 787
GLY A 785
 None
 1.30A 5zbdB-5ot4A:
undetectable		 5zbdB-5ot4A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6esd FLAVIN-DEPENDENT
L-TRYPTOPHAN OXIDASE
VIOA

(Chromobacterium
violaceum) 		no annotation 10 ARG B  64
TYR B 143
ALA B 145
HIS B 163
LEU B 267
TYR B 309
ASP B 311
VAL B 363
GLY B 396
TRP B 397
 CL  B 502 ( 3.6A)
None
None
CL  B 502 ( 4.9A)
FAD  B 501 (-3.8A)
None
None
None
FAD  B 501 ( 4.3A)
FAD  B 501 (-4.9A)
 0.45A 5zbdB-6esdB:
60.4		 5zbdB-6esdB:
undetectable