SIMILAR PATTERNS OF AMINO ACIDS FOR 5YOD_H_BEZH201_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1c0a ASPARTYL TRNA
SYNTHETASE


(Escherichia
coli)
PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon)
PF02938
(GAD)
4 HIS A 449
SER A 487
TYR A 474
GLY A 486
AMO  A 831 (-4.2A)
AMO  A 831 ( 4.5A)
None
AMO  A 831 (-3.5A)
0.96A 5yodH-1c0aA:
undetectable
5yodH-1c0aA:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jmo HEPARIN COFACTOR II

(Homo sapiens)
PF00079
(Serpin)
4 HIS A 159
SER A 147
GLY A 144
TYR A 225
None
1.05A 5yodH-1jmoA:
undetectable
5yodH-1jmoA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1l0w ASPARTYL-TRNA
SYNTHETASE


(Thermus
thermophilus)
PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon)
PF02938
(GAD)
4 HIS A 443
SER A 481
TYR A 468
GLY A 480
None
1.05A 5yodH-1l0wA:
undetectable
5yodH-1l0wA:
15.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m1j FIBRINOGEN GAMMA
CHAIN


(Gallus gallus)
PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha)
4 HIS C 343
SER C 332
TYR C 211
GLY C 333
None
1.40A 5yodH-1m1jC:
undetectable
5yodH-1m1jC:
18.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1uou THYMIDINE
PHOSPHORYLASE


(Homo sapiens)
PF00591
(Glycos_transf_3)
PF02885
(Glycos_trans_3N)
PF07831
(PYNP_C)
4 HIS A 116
SER A 144
GLY A 145
TYR A 199
CMU  A1481 (-4.3A)
None
None
CMU  A1481 (-4.7A)
1.45A 5yodH-1uouA:
undetectable
5yodH-1uouA:
17.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wzz PROBABLE
ENDOGLUCANASE


(Komagataeibacter
xylinus)
PF01270
(Glyco_hydro_8)
4 SER A 291
TYR A 293
GLY A 281
TYR A 244
None
1.49A 5yodH-1wzzA:
undetectable
5yodH-1wzzA:
22.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z7z HUMAN COXSACKIEVIRUS
A21
HUMAN COXSACKIEVIRUS
A21


(Enterovirus C;
Enterovirus C)
PF00073
(Rhv)
PF00073
(Rhv)
4 HIS 3 108
TYR 1 200
GLY 1 195
TYR 1 193
None
1.33A 5yodH-1z7z3:
undetectable
5yodH-1z7z3:
22.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2d1g ACID PHOSPHATASE

(Francisella
tularensis)
PF04185
(Phosphoesterase)
4 HIS A 106
SER A 103
GLY A 351
TYR A 353
VO4  A 801 (-3.8A)
None
None
None
1.16A 5yodH-2d1gA:
undetectable
5yodH-2d1gA:
16.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2fom POLYPROTEIN

(Dengue virus)
PF00949
(Peptidase_S7)
4 HIS B  51
SER B 135
TYR B 150
GLY B 151
None
0.55A 5yodH-2fomB:
22.9
5yodH-2fomB:
54.44
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2fp7 GENOME POLYPROTEIN

(West Nile virus)
PF00949
(Peptidase_S7)
5 HIS B  51
SER B 135
TYR B 150
GLY B 151
TYR B 161
None
0.48A 5yodH-2fp7B:
27.6
5yodH-2fp7B:
62.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hdw HYPOTHETICAL PROTEIN
PA2218


(Pseudomonas
aeruginosa)
PF02129
(Peptidase_S15)
4 HIS A 344
SER A 319
TYR A 321
TYR A 214
None
1.49A 5yodH-2hdwA:
undetectable
5yodH-2hdwA:
21.37
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2whx SERINE
PROTEASE/NTPASE/HELI
CASE NS3


(Dengue virus)
PF00949
(Peptidase_S7)
PF07652
(Flavi_DEAD)
4 HIS A  51
SER A 135
TYR A 150
GLY A 151
None
0.56A 5yodH-2whxA:
11.4
5yodH-2whxA:
36.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ak5 HEMOGLOBIN-BINDING
PROTEASE HBP


(Escherichia
coli)
PF02395
(Peptidase_S6)
4 HIS A 125
SER A 259
GLY A 257
TYR A 214
None
1.32A 5yodH-3ak5A:
5.9
5yodH-3ak5A:
11.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bvh FIBRINOGEN GAMMA
CHAIN


(Homo sapiens)
PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha)
4 HIS C 343
SER C 332
TYR C 211
GLY C 333
None
1.37A 5yodH-3bvhC:
undetectable
5yodH-3bvhC:
21.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c7o ENDO-1,4-BETA-XYLANA
SE


(Bacillus
subtilis)
PF03422
(CBM_6)
PF04616
(Glyco_hydro_43)
4 HIS A 291
SER A 239
TYR A 238
GLY A 228
None
1.27A 5yodH-3c7oA:
undetectable
5yodH-3c7oA:
17.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c87 ENTEROCHELIN
ESTERASE


(Shigella
flexneri)
PF00756
(Esterase)
PF11806
(DUF3327)
4 HIS A 375
SER A 307
TYR A 308
GLY A 306
None
1.25A 5yodH-3c87A:
undetectable
5yodH-3c87A:
19.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e4w PUTATIVE
UNCHARACTERIZED
PROTEIN


(Mycobacterium
avium)
PF00199
(Catalase)
4 HIS A  28
TYR A 162
GLY A  82
TYR A 157
HEM  A 501 ( 3.5A)
None
HEM  A 501 ( 4.2A)
None
1.43A 5yodH-3e4wA:
undetectable
5yodH-3e4wA:
19.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3eqa GLUCOAMYLASE

(Aspergillus
niger)
PF00723
(Glyco_hydro_15)
4 SER A 124
TYR A 482
GLY A 125
TYR A 193
None
1.15A 5yodH-3eqaA:
undetectable
5yodH-3eqaA:
18.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fib FIBRINOGEN GAMMA
CHAIN RESIDUES


(Homo sapiens)
PF00147
(Fibrinogen_C)
4 HIS A 343
SER A 332
TYR A 211
GLY A 333
None
1.43A 5yodH-3fibA:
undetectable
5yodH-3fibA:
22.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ghg FIBRINOGEN GAMMA
CHAIN


(Homo sapiens)
PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha)
4 HIS C 343
SER C 332
TYR C 211
GLY C 333
HIS  C 343 ( 1.0A)
SER  C 332 ( 0.0A)
TYR  C 211 ( 1.3A)
GLY  C 333 ( 0.0A)
1.37A 5yodH-3ghgC:
undetectable
5yodH-3ghgC:
19.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gzd SELENOCYSTEINE LYASE

(Homo sapiens)
PF00266
(Aminotran_5)
4 HIS C 322
TYR C  36
GLY C 419
TYR C 261
None
1.22A 5yodH-3gzdC:
undetectable
5yodH-3gzdC:
16.86
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3lkw FUSION PROTEIN OF
NONSTRUCTURAL
PROTEIN 2B AND
NONSTRUCTURAL
PROTEIN 3


(Dengue virus)
PF00949
(Peptidase_S7)
PF01002
(Flavi_NS2B)
4 HIS A 101
TYR A 200
GLY A 201
TYR A 211
GOL  A 303 (-3.7A)
None
None
GOL  A 303 (-4.8A)
0.37A 5yodH-3lkwA:
24.5
5yodH-3lkwA:
43.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nqp SUSD SUPERFAMILY
PROTEIN


(Bacteroides
fragilis)
PF07980
(SusD_RagB)
PF14322
(SusD-like_3)
4 HIS A 381
SER A 365
TYR A 378
GLY A 379
None
None
EDO  A1005 ( 3.6A)
EDO  A1004 ( 4.8A)
1.50A 5yodH-3nqpA:
undetectable
5yodH-3nqpA:
17.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qg5 RAD50

(Thermotoga
maritima)
PF13476
(AAA_23)
PF13558
(SbcCD_C)
4 HIS A 131
SER A  44
GLY A  51
TYR A  60
None
1.40A 5yodH-3qg5A:
undetectable
5yodH-3qg5A:
17.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3u1j SERINE PROTEASE NS3

(Dengue virus)
PF00949
(Peptidase_S7)
5 HIS B  51
SER B 135
TYR B 150
GLY B 151
TYR B 161
None
0.57A 5yodH-3u1jB:
26.2
5yodH-3u1jB:
54.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wai MALTOSE-BINDING
PERIPLASMIC PROTEIN,
TRANSMEMBRANE
OLIGOSACCHARYL
TRANSFERASE


(Escherichia
coli;
Archaeoglobus
fulgidus)
PF13416
(SBP_bac_8)
4 HIS A 683
SER A 768
TYR A 701
GLY A 769
None
1.20A 5yodH-3waiA:
undetectable
5yodH-3waiA:
11.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3waj TRANSMEMBRANE
OLIGOSACCHARYL
TRANSFERASE


(Archaeoglobus
fulgidus)
PF02516
(STT3)
4 HIS A 683
SER A 768
TYR A 701
GLY A 769
None
1.18A 5yodH-3wajA:
2.3
5yodH-3wajA:
13.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4dkn AMPHIOXUS GREEN
FLUORESCENT PROTEIN,
GFPA1


(Branchiostoma
floridae)
PF01353
(GFP)
4 SER A  77
TYR A  84
GLY A  83
TYR A 106
None
1.50A 5yodH-4dknA:
undetectable
5yodH-4dknA:
20.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g2a HYPOTHETICAL PROTEIN

(Legionella
pneumophila)
PF13308
(YARHG)
PF14415
(DUF4424)
4 SER A  38
TYR A 186
GLY A  37
TYR A 170
None
1.28A 5yodH-4g2aA:
undetectable
5yodH-4g2aA:
19.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gpv PUTATIVE CELL
ADHESION PROTEIN


(Bacteroides
eggerthii)
PF06321
(P_gingi_FimA)
4 SER A  88
TYR A  69
GLY A  87
TYR A  85
None
1.40A 5yodH-4gpvA:
undetectable
5yodH-4gpvA:
21.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4j38 OUTER SURFACE
PROTEIN E


(Borreliella
burgdorferi)
PF02471
(OspE)
4 HIS A  81
TYR A 111
GLY A 113
TYR A 159
None
1.39A 5yodH-4j38A:
undetectable
5yodH-4j38A:
22.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mbg CAAX
FARNESYLTRANSFERASE
ALPHA SUBUNIT RAM2
CAAX
FARNESYLTRANSFERASE
BETA SUBUNIT RAM1


(Aspergillus
fumigatus;
Aspergillus
fumigatus)
PF01239
(PPTA)
PF00432
(Prenyltrans)
4 SER B 303
TYR B 314
GLY B 304
TYR A 147
None
FPP  B 601 (-4.4A)
None
FPP  B 601 (-4.0A)
1.44A 5yodH-4mbgB:
undetectable
5yodH-4mbgB:
17.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n03 ABC-TYPE
BRANCHED-CHAIN AMINO
ACID TRANSPORT
SYSTEMS PERIPLASMIC
COMPONENT-LIKE
PROTEIN


(Thermomonospora
curvata)
PF13458
(Peripla_BP_6)
4 HIS A 191
SER A 247
TYR A 198
GLY A 199
None
None
PLM  A 601 (-3.9A)
None
1.31A 5yodH-4n03A:
undetectable
5yodH-4n03A:
19.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rmf ASPARTATE--TRNA(ASP/
ASN) LIGASE


(Mycolicibacterium
smegmatis)
PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon)
PF02938
(GAD)
4 HIS A 449
SER A 487
TYR A 474
GLY A 486
FMT  A 702 (-4.3A)
FMT  A 702 ( 4.6A)
None
FMT  A 702 (-3.2A)
1.00A 5yodH-4rmfA:
undetectable
5yodH-4rmfA:
16.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a8q PUTATIVE RETAINING
B-GLYCOSIDASE


(Saccharophagus
degradans)
PF00150
(Cellulase)
4 HIS A 303
SER A 337
TYR A 300
GLY A 301
BGC  A1366 ( 3.7A)
BGC  A1368 (-3.5A)
None
None
0.83A 5yodH-5a8qA:
undetectable
5yodH-5a8qA:
20.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aho 5' EXONUCLEASE
APOLLO


(Homo sapiens)
PF07522
(DRMBL)
4 HIS A  36
SER A  30
GLY A 119
TYR A 117
ZN  A1320 ( 3.4A)
None
None
None
1.25A 5yodH-5ahoA:
undetectable
5yodH-5ahoA:
20.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5eue PUTATIVE
SPHINGOSINE-1-PHOSPH
ATE LYASE


(Symbiobacterium
thermophilum)
PF00282
(Pyridoxal_deC)
4 HIS A 441
SER A 101
GLY A 102
TYR A 105
None
None
PO4  A 602 ( 3.8A)
LLP  A 311 (-3.9A)
1.44A 5yodH-5eueA:
undetectable
5yodH-5eueA:
15.21
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5gj4 SERINE PROTEASE NS3

(Zika virus)
PF00949
(Peptidase_S7)
5 HIS B  51
SER B 135
TYR B 150
GLY B 151
TYR B 161
None
0.35A 5yodH-5gj4B:
28.1
5yodH-5gj4B:
99.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h3h ABHYDROLASE
DOMAIN-CONTAINING
PROTEIN


(Exiguobacterium
antarcticum)
PF00561
(Abhydrolase_1)
PF08386
(Abhydrolase_4)
4 SER A 185
TYR A  59
GLY A  58
TYR A  69
None
0.83A 5yodH-5h3hA:
undetectable
5yodH-5h3hA:
23.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h6z SET
DOMAIN-CONTAINING
PROTEIN 7


(Schizosaccharomyces
pombe)
no annotation 4 SER A  37
TYR A  99
GLY A  75
TYR A  61
None
None
None
NH4  A 208 ( 4.3A)
1.40A 5yodH-5h6zA:
undetectable
5yodH-5h6zA:
undetectable
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5idk GENOME
POLYPROTEIN,SERINE
PROTEASE SUBUNIT
NS2B, SERINE
PROTEASE NS3


(West Nile virus)
PF00949
(Peptidase_S7)
PF01002
(Flavi_NS2B)
5 HIS A1051
SER A1135
TYR A1150
GLY A1151
TYR A1161
6A8  A1201 (-3.3A)
6A8  A1201 (-1.5A)
None
6A8  A1201 (-4.2A)
6A8  A1201 (-4.1A)
0.50A 5yodH-5idkA:
23.7
5yodH-5idkA:
52.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kck ANTHRANILATE
SYNTHASE COMPONENT I


(Streptococcus
pneumoniae)
PF00425
(Chorismate_bind)
PF04715
(Anth_synt_I_N)
4 HIS A  81
SER A  83
GLY A  88
TYR A 127
None
1.35A 5yodH-5kckA:
undetectable
5yodH-5kckA:
20.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nbq OUTER SURFACE
PROTEIN E


(Borreliella
burgdorferi)
no annotation 4 HIS G  81
TYR G 111
GLY G 113
TYR G 159
None
1.42A 5yodH-5nbqG:
undetectable
5yodH-5nbqG:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ngj TAIL TUBE PROTEIN

(Escherichia
virus T5)
no annotation 4 HIS A  96
SER A 100
TYR A 128
GLY A 101
None
CL  A 502 (-4.2A)
None
None
0.96A 5yodH-5ngjA:
undetectable
5yodH-5ngjA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w25 ASPARTATE--TRNA(ASP/
ASN) LIGASE


(Mycobacterium
tuberculosis)
PF00152
(tRNA-synt_2)
PF01336
(tRNA_anti-codon)
PF02938
(GAD)
4 HIS A 452
SER A 490
TYR A 477
GLY A 489
ASP  A 701 (-3.9A)
ASP  A 701 ( 4.6A)
None
ASP  A 701 ( 4.0A)
0.95A 5yodH-5w25A:
undetectable
5yodH-5w25A:
15.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xgs RCC1-LIKE G
EXCHANGING
FACTOR-LIKE PROTEIN


(Homo sapiens)
PF00415
(RCC1)
PF13540
(RCC1_2)
4 HIS A 455
TYR A 116
GLY A 115
TYR A 291
None
1.27A 5yodH-5xgsA:
undetectable
5yodH-5xgsA:
20.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cey BIFUNCTIONAL AAC/APH

(Staphylococcus
aureus)
no annotation 4 HIS A 372
SER A 397
GLY A 395
TYR A 244
None
None
MG  A 702 ( 4.5A)
None
1.24A 5yodH-6ceyA:
2.2
5yodH-6ceyA:
undetectable