SIMILAR PATTERNS OF AMINO ACIDS FOR 5X7P_A_ACRA1401_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wd3 ALPHA-L-ARABINOFURAN
OSIDASE B

(Aspergillus
kawachii) 		PF05270
(AbfB)
PF09206
(ArabFuran-catal) 		5 GLN A  77
TYR A 146
ILE A  91
GLY A  55
SER A  56
 None
 1.46A 5x7pB-1wd3A:
2.8		 5x7pB-1wd3A:
17.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bf6 EXO-ALPHA-SIALIDASE

(Clostridium
perfringens) 		PF13088
(BNR_2) 		5 GLN A 536
GLN A 493
ILE A 267
GLY A 559
SER A 558
 None
SIA  A1692 (-3.0A)
SIA  A1692 (-4.5A)
None
None
 1.31A 5x7pB-2bf6A:
0.9		 5x7pB-2bf6A:
16.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2htv NEURAMINIDASE

(Influenza A
virus) 		PF00064
(Neur) 		5 GLN A 136
TYR A 406
ILE A 427
GLY A 193
SER A 175
 None
 1.46A 5x7pB-2htvA:
0.0		 5x7pB-2htvA:
14.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vrk ALPHA-L-ARABINOFURAN
OSIDASE

(Thermobacillus
xylanilyticus) 		PF06964
(Alpha-L-AF_C) 		5 ASP A 297
TYR A 125
ILE A 295
GLY A 133
SER A 132
 None
 1.40A 5x7pB-2vrkA:
1.3		 5x7pB-2vrkA:
17.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ho4 GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Aneurinibacillus
thermoaerophilus) 		PF00483
(NTP_transferase) 		5 GLN A  88
GLN A  80
ASP A 108
GLY A 193
SER A 190
 None
THM  A 302 (-3.0A)
THM  A 302 (-3.5A)
None
None
 1.47A 5x7pB-4ho4A:
0.4		 5x7pB-4ho4A:
12.58
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5x7s GLYCOSIDE HYDROLASE
FAMILY 31
ALPHA-GLUCOSIDASE

(Paenibacillus
sp. 598K) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF16990
(CBM_35)
PF17137
(DUF5110) 		9 GLN A 174
GLN A 194
TRP A 284
ASP A 311
TYR A 312
ILE A 354
LYS A 356
GLY A 437
SER A 438
 None
 0.39A 5x7pB-5x7sA:
58.3		 5x7pB-5x7sA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5x7s GLYCOSIDE HYDROLASE
FAMILY 31
ALPHA-GLUCOSIDASE

(Paenibacillus
sp. 598K) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF16990
(CBM_35)
PF17137
(DUF5110) 		6 GLN A 193
GLN A 194
TRP A 284
ASP A 311
TYR A 312
ILE A 354
 None
 1.47A 5x7pB-5x7sA:
58.3		 5x7pB-5x7sA:
100.00