SIMILAR PATTERNS OF AMINO ACIDS FOR 5X7F_A_SAMA301_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1do5 HUMAN COPPER
CHAPERONE FOR
SUPEROXIDE DISMUTASE
DOMAIN II

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 SER A 221
ASP A 167
HIS A 164
ASP A 206
 None
ZN  A  28 (-2.2A)
ZN  A  28 (-3.3A)
None
 0.93A 5x7fA-1do5A:
0.0		 5x7fA-1do5A:
21.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m1j FIBRINOGEN BETA
CHAIN

(Gallus gallus) 		PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha) 		4 SER B 380
ASP B 402
HIS B 412
ASP B 387
 None
None
None
CA  B 503 (-3.0A)
 1.48A 5x7fA-1m1jB:
undetectable		 5x7fA-1m1jB:
15.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b24 NAPHTHALENE
DIOXYGENASE LARGE
SUBUNIT

(Rhodococcus sp.
NCIMB 12038) 		PF00355
(Rieske)
PF00848
(Ring_hydroxyl_A) 		4 SER A 158
ASP A 164
HIS A 247
ASP A 160
 None
 1.47A 5x7fA-2b24A:
0.0		 5x7fA-2b24A:
20.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2h88 SUCCINATE
DEHYDROGENASE
FLAVOPROTEIN SUBUNIT

(Gallus gallus) 		PF00890
(FAD_binding_2)
PF02910
(Succ_DH_flav_C) 		4 SER A 400
ASP A 386
HIS A 381
ASP A  92
 None
 1.31A 5x7fA-2h88A:
0.0		 5x7fA-2h88A:
17.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xu2 UPF0271 PROTEIN
PA4511

(Pseudomonas
aeruginosa) 		PF03746
(LamB_YcsF) 		4 SER A  30
ASP A 234
HIS A 232
ASP A  27
 None
None
CIT  A1249 (-3.7A)
None
 1.28A 5x7fA-2xu2A:
0.5		 5x7fA-2xu2A:
29.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f0w NUMB-LIKE PROTEIN

(Homo sapiens) 		PF00640
(PID) 		4 SER A 158
ASP A 101
HIS A  97
ASP A 150
 None
None
SO4  A   3 (-3.7A)
None
 1.47A 5x7fA-3f0wA:
0.0		 5x7fA-3f0wA:
23.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h32 FIBRINOGEN BETA
CHAIN

(Homo sapiens) 		PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha) 		4 SER B 376
ASP B 398
HIS B 408
ASP B 383
 None
None
None
CA  B 502 (-2.6A)
 1.50A 5x7fA-3h32B:
0.0		 5x7fA-3h32B:
17.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3keh GLUCOCEREBROSIDASE

(Homo sapiens) 		PF02055
(Glyco_hydro_30)
PF17189
(Glyco_hydro_30C) 		4 SER A 464
ASP A 445
HIS A 365
ASP A 443
 None
 1.15A 5x7fA-3kehA:
0.8		 5x7fA-3kehA:
17.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3r08 T-CELL SURFACE
GLYCOPROTEIN CD3
EPSILON CHAIN
MOUSE ANTI-MOUSE
CD3EPSILON ANTIBODY
2C11 HEAVY CHAIN

(Cricetulus
migratorius;
Cricetulus
migratorius) 		PF16681
(Ig_5)
PF07654
(C1-set)
PF07686
(V-set) 		4 SER H  52
ASP E  43
HIS E  45
ASP E  26
 None
 1.47A 5x7fA-3r08H:
0.0		 5x7fA-3r08H:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vss BETA-FRUCTOFURANOSID
ASE

(Microbacterium
saccharophilum) 		PF02435
(Glyco_hydro_68) 		4 SER A 416
ASP A 288
HIS A 291
ASP A 412
 None
None
FRU  A 603 (-4.3A)
None
 1.47A 5x7fA-3vssA:
undetectable		 5x7fA-3vssA:
18.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hjl NAPHTHALENE
1,2-DIOXYGENASE
SUBUNIT ALPHA
NAPHTHALENE
1,2-DIOXYGENASE
SUBUNIT BETA

(Pseudomonas sp.
C18;
Pseudomonas sp.
C18) 		PF00355
(Rieske)
PF00848
(Ring_hydroxyl_A)
PF00866
(Ring_hydroxyl_B) 		4 SER A 219
ASP A 361
HIS A 213
ASP B 103
 None
None
FE  A 502 (-3.2A)
None
 1.47A 5x7fA-4hjlA:
undetectable		 5x7fA-4hjlA:
21.08
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5x7f PUTATIVE
O-METHYLTRANSFERASE
RV1220C

(Mycobacterium
tuberculosis) 		PF01596
(Methyltransf_3) 		4 SER A  72
ASP A  90
HIS A  95
ASP A 138
 SAM  A 301 (-2.8A)
SAM  A 301 (-2.8A)
SAM  A 301 (-3.8A)
SAM  A 301 (-3.6A)
 0.00A 5x7fA-5x7fA:
41.7		 5x7fA-5x7fA:
100.00