SIMILAR PATTERNS OF AMINO ACIDS FOR 5W7P_A_SAMA501_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bxt PROTEIN
(STREPTOCOCCAL
SUPERANTIGEN)

(Streptococcus
pyogenes) 		PF01123
(Stap_Strp_toxin)
PF02876
(Stap_Strp_tox_C) 		4 TYR A  90
HIS A  31
ASP A  55
ASP A  62
 None
 1.32A 5w7pA-1bxtA:
undetectable		 5w7pA-1bxtA:
17.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qq6 MANDELATE
RACEMASE/MUCONATE
LACTONIZING
ENZYME-LIKE PROTEIN

(Rubrobacter
xylanophilus) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		4 TYR A 151
HIS A 343
ASP A 169
ASP A 172
 None
 1.37A 5w7pA-2qq6A:
0.5		 5w7pA-2qq6A:
23.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gdo UNCHARACTERIZED
OXIDOREDUCTASE YVAA

(Bacillus
subtilis) 		PF01408
(GFO_IDH_MocA)
PF02894
(GFO_IDH_MocA_C) 		4 TYR A 247
HIS A 189
ASP A 136
ASP A 282
 None
 1.20A 5w7pA-3gdoA:
3.2		 5w7pA-3gdoA:
21.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3i04 CARBON MONOXIDE
DEHYDROGENASE/ACETYL
-COA SYNTHASE
SUBUNIT BETA

(Moorella
thermoacetica) 		PF03063
(Prismane) 		4 TYR A 242
ASP A 558
ASP A 552
ARG A 148
 None
 0.94A 5w7pA-3i04A:
2.0		 5w7pA-3i04A:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kux PUTATIVE
OXIDOREDUCTASE

(Yersinia pestis) 		PF01408
(GFO_IDH_MocA)
PF02894
(GFO_IDH_MocA_C) 		4 TYR A 238
HIS A 180
ASP A 127
ASP A 273
 None
 1.27A 5w7pA-3kuxA:
4.6		 5w7pA-3kuxA:
22.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v64 LOW-DENSITY
LIPOPROTEIN
RECEPTOR-RELATED
PROTEIN 4

(Rattus
norvegicus) 		PF00058
(Ldl_recept_b)
PF14670
(FXa_inhibition) 		4 TYR C 424
HIS C 562
ASP C 606
ASP C 651
 None
 1.43A 5w7pA-3v64C:
undetectable		 5w7pA-3v64C:
21.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4a5w COMPLEMENT C5

(Homo sapiens) 		PF00207
(A2M)
PF01759
(NTR)
PF01835
(A2M_N)
PF07677
(A2M_recep)
PF07678
(A2M_comp)
PF07703
(A2M_N_2) 		4 TYR A 582
HIS A 574
ASP A 578
ARG A 783
 None
 1.31A 5w7pA-4a5wA:
0.0		 5w7pA-4a5wA:
14.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hu0 CELLULASE

(uncultured
bacterium) 		PF00150
(Cellulase) 		4 HIS A 146
ASP A  80
ASP A  85
ARG A 107
 CTT  A 401 (-3.7A)
None
None
None
 1.32A 5w7pA-4hu0A:
0.4		 5w7pA-4hu0A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hu0 CELLULASE

(uncultured
bacterium) 		PF00150
(Cellulase) 		4 TYR A 123
HIS A 146
ASP A  80
ASP A  85
 None
CTT  A 401 (-3.7A)
None
None
 1.33A 5w7pA-4hu0A:
0.4		 5w7pA-4hu0A:
23.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k0e HEAVY METAL CATION
TRICOMPONENT EFFLUX
PUMP ZNEA(CZCA-LIKE)

(Cupriavidus
metallidurans) 		PF00873
(ACR_tran) 		4 HIS A 608
ASP A 602
ASP A 128
ARG A 811
 None
ZN  A1101 ( 3.6A)
None
None
 1.47A 5w7pA-4k0eA:
0.2		 5w7pA-4k0eA:
16.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nen INTEGRIN ALPHA-X

(Homo sapiens) 		PF00092
(VWA)
PF01839
(FG-GAP)
PF08441
(Integrin_alpha2) 		4 TYR A  52
ASP A 578
ASP A   4
ARG A 650
 None
CA  A1114 (-2.9A)
None
None
 1.27A 5w7pA-4nenA:
undetectable		 5w7pA-4nenA:
18.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qrj PUTATIVE
6-PHOSPHOGLUCONOLACT
ONASE

(Bacteroides
uniformis) 		PF10282
(Lactonase) 		4 HIS A 174
ASP A 117
ASP A  88
ARG A 167
 None
 1.48A 5w7pA-4qrjA:
undetectable		 5w7pA-4qrjA:
22.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dtr HISTONE-LYSINE
N-METHYLTRANSFERASE,
H3 LYSINE-79
SPECIFIC

(Homo sapiens) 		PF08123
(DOT1) 		4 TYR A 136
HIS A 182
ASP A 142
ARG A 101
 None
 1.49A 5w7pA-5dtrA:
10.3		 5w7pA-5dtrA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ogl UNDECAPRENYL-DIPHOSP
HOOLIGOSACCHARIDE--P
ROTEIN
GLYCOTRANSFERASE

(Campylobacter
lari) 		no annotation 4 TYR A  79
HIS A 485
ASP A 481
ASP A  76
 9UB  A 803 (-4.4A)
None
None
MN  A 802 (-3.3A)
 1.15A 5w7pA-5oglA:
undetectable		 5w7pA-5oglA:
19.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w7p OXAC

(Penicillium
oxalicum) 		no annotation 4 HIS A 246
ASP A 269
ASP A 292
ARG A 310
 SAM  A 501 (-3.8A)
SAM  A 501 (-2.7A)
SAM  A 501 (-3.4A)
SAM  A 501 (-4.1A)
 0.89A 5w7pA-5w7pA:
61.0		 5w7pA-5w7pA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w7p OXAC

(Penicillium
oxalicum) 		no annotation 5 TYR A 198
HIS A 246
ASP A 269
ASP A 292
ARG A 309
 SAM  A 501 (-4.8A)
SAM  A 501 (-3.8A)
SAM  A 501 (-2.7A)
SAM  A 501 (-3.4A)
SAM  A 501 (-4.2A)
 0.01A 5w7pA-5w7pA:
61.0		 5w7pA-5w7pA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xqo PCRGLX PROTEIN

(Penicillium
chrysogenum) 		no annotation 4 HIS A 624
ASP A 621
ASP A 584
ARG A 667
 None
CA  A1001 (-2.1A)
None
None
 1.46A 5w7pA-5xqoA:
undetectable		 5w7pA-5xqoA:
undetectable