SIMILAR PATTERNS OF AMINO ACIDS FOR 5SYI_A_NIZA805

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bw0 PROTEIN (TYROSINE
AMINOTRANSFERASE)

(Trypanosoma
cruzi) 		PF00155
(Aminotran_1_2) 		4 ARG A 261
TRP A 260
ALA A 252
PRO A  43
 LLP  A 253 ( 2.9A)
None
LLP  A 253 ( 3.1A)
None
 1.35A 5syiA-1bw0A:
undetectable		 5syiA-1bw0A:
20.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fjj HYPOTHETICAL 17.1
KDA PROTEIN IN
MODC-BIOA INTERGENIC
REGION

(Escherichia
coli) 		PF01161
(PBP) 		4 TRP A  61
HIS A  63
ALA A 106
PRO A 109
 EPE  A 206 (-3.4A)
EPE  A 206 (-4.2A)
None
EPE  A 206 (-4.1A)
 1.46A 5syiA-1fjjA:
undetectable		 5syiA-1fjjA:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fux HYPOTHETICAL 19.5
KDA PROTEIN IN
EMRE-RUS INTERGENIC
REGION

(Escherichia
coli) 		PF01161
(PBP) 		4 TRP A  61
HIS A  63
ALA A 107
PRO A 110
 None
 1.49A 5syiA-1fuxA:
undetectable		 5syiA-1fuxA:
12.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1h3j PEROXIDASE

(Coprinopsis
cinerea) 		PF00141
(peroxidase)
PF11895
(Peroxidase_ext) 		4 ARG A  51
HIS A  55
ALA A  91
PRO A 155
 HEM  A1344 (-4.4A)
None
None
HEM  A1344 (-4.2A)
 0.53A 5syiA-1h3jA:
23.4		 5syiA-1h3jA:
20.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1itk CATALASE-PEROXIDASE

(Haloarcula
marismortui) 		PF00141
(peroxidase) 		4 ARG A  92
TRP A  95
HIS A  96
PRO A 221
 HEM  A 800 (-4.2A)
HEM  A 800 (-3.5A)
None
HEM  A 800 (-4.3A)
 0.17A 5syiA-1itkA:
62.0		 5syiA-1itkA:
59.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1iyn CHLOROPLASTIC
ASCORBATE PEROXIDASE

(Nicotiana
tabacum) 		PF00141
(peroxidase) 		4 ARG A  30
TRP A  33
HIS A  34
ALA A  66
 HEM  A 296 (-3.9A)
HEM  A 296 (-3.7A)
None
None
 0.38A 5syiA-1iynA:
28.3		 5syiA-1iynA:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yq2 BETA-GALACTOSIDASE

(Arthrobacter
sp. C2-2) 		PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF02929
(Bgal_small_N)
PF16353
(DUF4981) 		4 ARG A 187
HIS A 189
ALA A  47
PRO A  45
 None
 1.46A 5syiA-1yq2A:
0.0		 5syiA-1yq2A:
23.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yzp PEROXIDASE
MANGANESE-DEPENDENT
I

(Phanerochaete
chrysosporium) 		PF00141
(peroxidase)
PF11895
(Peroxidase_ext) 		4 ARG A  42
HIS A  46
ALA A  79
PRO A 144
 HEM  A 396 (-4.0A)
None
None
HEM  A 396 (-4.2A)
 0.99A 5syiA-1yzpA:
24.1		 5syiA-1yzpA:
21.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2r14 MORPHINONE REDUCTASE

(Pseudomonas
putida) 		PF00724
(Oxidored_FMN) 		4 ARG A 174
TRP A  79
ALA A  82
PRO A  41
 None
 1.48A 5syiA-2r14A:
undetectable		 5syiA-2r14A:
22.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vki 3-PHOPSHOINOSITIDE
DEPENDENT PROTEIN
KINASE 1

(Homo sapiens) 		PF14593
(PH_3) 		4 ARG A 537
HIS A 533
ALA A 532
PRO A 506
 None
 1.46A 5syiA-2vkiA:
undetectable		 5syiA-2vkiA:
12.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2w8d PROCESSED GLYCEROL
PHOSPHATE
LIPOTEICHOIC ACID
SYNTHASE 2

(Bacillus
subtilis) 		PF00884
(Sulfatase) 		4 ARG A 554
HIS A 553
ALA A 521
PRO A 567
 None
 1.39A 5syiA-2w8dA:
undetectable		 5syiA-2w8dA:
20.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xj6 ASCORBATE PEROXIDASE

(Glycine max) 		PF00141
(peroxidase) 		4 ARG A  38
TRP A  41
HIS A  42
ALA A  70
 HEM  A1001 ( 4.2A)
HEM  A1001 (-3.5A)
None
None
 0.42A 5syiA-2xj6A:
10.2		 5syiA-2xj6A:
18.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3q48 CHAPERONE CUPB2

(Pseudomonas
aeruginosa) 		PF00345
(PapD_N)
PF02753
(PapD_C) 		4 ARG A 244
TRP A 161
ALA A 156
PRO A 180
 None
 1.27A 5syiA-3q48A:
undetectable		 5syiA-3q48A:
17.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wkq NITRITE REDUCTASE

(Geobacillus
thermodenitrificans) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 TRP A  63
HIS A  21
ALA A  20
PRO A 115
 FMT  A 412 (-4.0A)
FMT  A 412 (-3.7A)
None
None
 1.39A 5syiA-3wkqA:
undetectable		 5syiA-3wkqA:
18.95
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wxo CATALASE-PEROXIDASE

(Synechococcus
elongatus) 		PF00141
(peroxidase) 		4 ARG A  91
TRP A  94
HIS A  95
PRO A 225
 HEM  A 801 ( 4.6A)
HEM  A 801 (-3.5A)
None
HEM  A 801 ( 4.2A)
 0.18A 5syiA-3wxoA:
63.6		 5syiA-3wxoA:
61.70
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4c51 CATALASE-PEROXIDASE

(Mycobacterium
tuberculosis) 		PF00141
(peroxidase) 		4 ARG A 104
TRP A 107
HIS A 108
PRO A 232
 HEM  A1741 (-4.0A)
HEM  A1741 (-3.6A)
None
HEM  A1741 ( 4.3A)
 0.36A 5syiA-4c51A:
66.6		 5syiA-4c51A:
65.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fcs VERSATILE PEROXIDASE
VPL2

(Pleurotus
eryngii) 		PF00141
(peroxidase)
PF11895
(Peroxidase_ext) 		4 ARG A  43
HIS A  47
ALA A  77
PRO A 141
 HEM  A 401 (-3.9A)
None
None
HEM  A 401 (-4.1A)
 0.86A 5syiA-4fcsA:
23.9		 5syiA-4fcsA:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k7d E3 UBIQUITIN-PROTEIN
LIGASE PARKIN

(Rattus
norvegicus) 		PF01485
(IBR) 		4 ARG A 402
HIS A 257
ALA A 398
PRO A 237
 None
ZN  A 504 (-3.1A)
None
None
 1.27A 5syiA-4k7dA:
undetectable		 5syiA-4k7dA:
16.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nla PUTATIVE
TRANSCRIPTIONAL
REGULATOR
TRANSCRIPTION
REGULATOR PROTEIN

(Sinorhizobium
meliloti) 		PF12833
(HTH_18)
PF14525
(AraC_binding_2) 		4 ARG A  64
TRP A  63
ALA A  65
PRO A  69
 None
 1.48A 5syiA-5nlaA:
0.1		 5syiA-5nlaA:
19.64