SIMILAR PATTERNS OF AMINO ACIDS FOR 5SVL_A_ACTA411

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a6d THERMOSOME (BETA
SUBUNIT)

(Thermoplasma
acidophilum) 		PF00118
(Cpn60_TCP1) 		4 LYS B 223
GLN B 350
VAL B 232
ASP B 230
 None
 1.25A 5svlA-1a6dB:
0.1		 5svlA-1a6dB:
20.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1i3s EARLY 35 KDA PROTEIN

(Autographa
californica
multiple
nucleopolyhedrovirus) 		PF02331
(P35) 		4 GLN A  13
VAL A 285
ASP A 195
ASN A 267
 None
 1.49A 5svlA-1i3sA:
0.0		 5svlA-1i3sA:
22.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ryy ALPHA-AMINO ACID
ESTER HYDROLASE

(Acetobacter
pasteurianus) 		PF02129
(Peptidase_S15)
PF08530
(PepX_C) 		4 GLN A 350
VAL A 357
ASP A 354
ASN A 361
 None
 1.27A 5svlA-1ryyA:
0.0		 5svlA-1ryyA:
19.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2huh PUTATIVE DNA
MISMATCH REPAIR
PROTEIN

(Bacteroides
thetaiotaomicron) 		PF09640
(DUF2027) 		4 LYS A 172
VAL A  85
ASP A  89
ASN A 145
 None
 1.41A 5svlA-2huhA:
0.0		 5svlA-2huhA:
17.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f1c PUTATIVE
2-C-METHYL-D-ERYTHRI
TOL 4-PHOSPHATE
CYTIDYLYLTRANSFERASE
2

(Listeria
monocytogenes) 		PF01128
(IspD) 		4 GLN A 169
VAL A 208
ASP A 135
ASN A 124
 None
 1.46A 5svlA-3f1cA:
0.0		 5svlA-3f1cA:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gri DIHYDROOROTASE

(Staphylococcus
aureus) 		PF01979
(Amidohydro_1) 		4 GLN A 211
VAL A 152
ASP A 149
ASN A 181
 None
 1.34A 5svlA-3griA:
undetectable		 5svlA-3griA:
21.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o6n APL1

(Anopheles
gambiae) 		PF00560
(LRR_1)
PF13855
(LRR_8) 		4 GLN A 367
VAL A 326
ASP A 344
ASN A 348
 None
None
NAG  A1001 (-3.6A)
None
 1.45A 5svlA-3o6nA:
0.0		 5svlA-3o6nA:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bed HEMOCYANIN KLH1

(Megathura
crenulata) 		PF00264
(Tyrosinase)
PF14830
(Haemocyan_bet_s) 		4 LYS A1065
GLN A1060
ASP A1002
ASN A1130
 None
 0.89A 5svlA-4bedA:
0.0		 5svlA-4bedA:
12.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ckr EPITHELIAL DISCOIDIN
DOMAIN-CONTAINING
RECEPTOR 1

(Homo sapiens) 		PF07714
(Pkinase_Tyr) 		4 GLN A 711
VAL A 774
ASP A 708
ASN A 706
 None
None
None
EDO  A1001 (-3.9A)
 1.49A 5svlA-4ckrA:
0.0		 5svlA-4ckrA:
21.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jis RIBITOL-5-PHOSPHATE
CYTIDYLYLTRANSFERASE

(Bacillus
subtilis) 		PF01128
(IspD) 		4 GLN A 170
VAL A 209
ASP A 136
ASN A 125
 None
 1.44A 5svlA-4jisA:
undetectable		 5svlA-4jisA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r9g MBP1

(Caldanaerobius
polysaccharolyticus) 		PF13416
(SBP_bac_8) 		4 GLN A 354
VAL A 341
ASP A 339
ASN A 343
 None
None
None
BMA  A 503 (-3.0A)
 1.38A 5svlA-4r9gA:
undetectable		 5svlA-4r9gA:
21.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4whb PHENYLUREA HYDROLASE
B

(Mycolicibacterium
brisbanense) 		no annotation 4 GLN E 300
VAL E  66
ASP E 344
ASN E  63
 None
 1.31A 5svlA-4whbE:
undetectable		 5svlA-4whbE:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yve P2X PURINOCEPTOR 3

(Homo sapiens) 		no annotation 4 GLN A  50
VAL A 246
ASP A 248
ASN A 312
 None
 0.49A 5svlA-5yveA:
30.7		 5svlA-5yveA:
undetectable