SIMILAR PATTERNS OF AMINO ACIDS FOR 5QJQ_C_K1SC305_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nt8 COBALAMIN
ADENOSYLTRANSFERASE

(Lactobacillus
reuteri) 		PF01923
(Cob_adeno_trans) 		4 GLU A  97
TRP A  94
VAL A  93
LEU A  65
 None
 1.43A 5qjqC-2nt8A:
0.0
5qjqD-2nt8A:
0.0		 5qjqC-2nt8A:
19.23
5qjqD-2nt8A:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o5n MUHV1GPM153

(Murid
betaherpesvirus
1) 		PF11624
(M157) 		4 TRP A 114
GLU A 135
VAL A 132
LEU A 144
 None
 1.26A 5qjqC-2o5nA:
0.0
5qjqD-2o5nA:
0.0		 5qjqC-2o5nA:
23.45
5qjqD-2o5nA:
23.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x40 BETA-GLUCOSIDASE

(Thermotoga
neapolitana) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		4 GLU A 504
TRP A 508
VAL A 506
LEU A 339
 None
 1.46A 5qjqC-2x40A:
0.0
5qjqD-2x40A:
0.0		 5qjqC-2x40A:
14.19
5qjqD-2x40A:
14.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fib FIBRINOGEN GAMMA
CHAIN RESIDUES

(Homo sapiens) 		PF00147
(Fibrinogen_C) 		4 GLU A 183
TRP A 191
VAL A 193
LEU A 246
 None
 1.46A 5qjqC-3fibA:
0.0
5qjqD-3fibA:
0.0		 5qjqC-3fibA:
20.08
5qjqD-3fibA:
20.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hn9 IRON COMPLEX
TRANSPORT SYSTEM
SUBSTRATE-BINDING
PROTEIN

([Eubacterium]
eligens) 		PF01497
(Peripla_BP_2) 		4 GLU A 307
TRP A 309
VAL A 313
LEU A 235
 None
 1.25A 5qjqC-4hn9A:
0.0
5qjqD-4hn9A:
0.0		 5qjqC-4hn9A:
22.02
5qjqD-4hn9A:
22.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qdf 3-KETOSTEROID
9ALPHA-HYDROXYLASE
OXYGENASE

(Rhodococcus
rhodochrous) 		PF00355
(Rieske) 		4 TRP B 160
TRP B 158
VAL B 159
LEU B 256
 None
 1.40A 5qjqC-4qdfB:
0.7
5qjqD-4qdfB:
0.0		 5qjqC-4qdfB:
18.02
5qjqD-4qdfB:
18.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wri OKADAIC ACID BINDING
PROTEIN 2-ALPHA

(Halichondria
okadai) 		no annotation 4 GLU A  25
TRP A  22
VAL A  36
LEU A  82
 MLY  A  47 ( 4.1A)
OKA  A 201 ( 4.7A)
None
None
 1.33A 5qjqC-4wriA:
undetectable
5qjqD-4wriA:
undetectable		 5qjqC-4wriA:
22.37
5qjqD-4wriA:
22.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gnx BETA-GLUCOSIDASE

(metagenome) 		PF00232
(Glyco_hydro_1) 		4 TRP A 342
GLU A 345
VAL A 341
LEU A 295
 None
 1.41A 5qjqC-5gnxA:
0.0
5qjqD-5gnxA:
0.0		 5qjqC-5gnxA:
18.51
5qjqD-5gnxA:
18.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nd7 KINESIN-LIKE PROTEIN
KIF20A

(Mus musculus) 		PF00225
(Kinesin) 		4 GLU C 352
TRP C 355
VAL C 351
LEU C 179
 None
 1.35A 5qjqC-5nd7C:
0.0
5qjqD-5nd7C:
0.0		 5qjqC-5nd7C:
18.66
5qjqD-5nd7C:
18.66