SIMILAR PATTERNS OF AMINO ACIDS FOR 5ODC_G_ACTG703

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tzb GLUCOSE-6-PHOSPHATE
ISOMERASE,
CONJECTURAL

(Pyrobaculum
aerophilum) 		PF10432
(bact-PGI_C) 		4 GLU A 203
ARG A 135
ARG A 196
GLU A 200
 None
 1.46A 5odcB-1tzbA:
0.0
5odcC-1tzbA:
0.0
5odcG-1tzbA:
2.2		 5odcB-1tzbA:
23.51
5odcC-1tzbA:
20.60
5odcG-1tzbA:
19.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y27 PHENYLACETATE-COENZY
ME A LIGASE

(Burkholderia
cenocepacia) 		PF00501
(AMP-binding)
PF14535
(AMP-binding_C_2) 		4 GLU A   8
ARG A 119
ARG A 315
GLU A  11
 None
 1.14A 5odcB-2y27A:
0.4
5odcC-2y27A:
undetectable
5odcG-2y27A:
4.1		 5odcB-2y27A:
22.67
5odcC-2y27A:
15.56
5odcG-2y27A:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pzj PROBABLE
ACETYLTRANSFERASES

(Chromobacterium
violaceum) 		PF13302
(Acetyltransf_3) 		4 GLU A 154
ARG A 156
ARG A 108
GLU A 118
 None
None
None
EDO  A 207 ( 4.8A)
 1.49A 5odcB-3pzjA:
0.0
5odcC-3pzjA:
0.0
5odcG-3pzjA:
0.9		 5odcB-3pzjA:
20.52
5odcC-3pzjA:
21.03
5odcG-3pzjA:
14.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4d86 POLY [ADP-RIBOSE]
POLYMERASE 14

(Homo sapiens) 		PF01661
(Macro) 		4 GLU A1146
ARG A1188
ARG A1189
GLU A1185
 None
 1.43A 5odcB-4d86A:
0.0
5odcC-4d86A:
undetectable
5odcG-4d86A:
0.0		 5odcB-4d86A:
23.15
5odcC-4d86A:
18.60
5odcG-4d86A:
19.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fva 5'-TYROSYL-DNA
PHOSPHODIESTERASE

(Caenorhabditis
elegans) 		PF03372
(Exo_endo_phos) 		4 GLU A 277
ARG A 240
ARG A 243
GLU A 278
 None
 1.42A 5odcB-4fvaA:
0.0
5odcC-4fvaA:
undetectable
5odcG-4fvaA:
0.6		 5odcB-4fvaA:
25.00
5odcC-4fvaA:
19.70
5odcG-4fvaA:
16.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ye5 PEPTIDOGLYCAN
SYNTHETASE
PENICILLIN-BINDING
PROTEIN 3

(Bifidobacterium
adolescentis) 		PF00905
(Transpeptidase)
PF03717
(PBP_dimer) 		4 GLU A 504
ARG A 592
ARG A 516
GLU A 500
 None
None
GOL  A 705 (-3.8A)
GOL  A 705 (-4.4A)
 1.15A 5odcB-4ye5A:
0.0
5odcC-4ye5A:
1.0
5odcG-4ye5A:
0.0		 5odcB-4ye5A:
19.61
5odcC-4ye5A:
14.01
5odcG-4ye5A:
21.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n1q METHYL-COENZYME M
REDUCTASE III FROM
METHANOTHERMOCOCCUS
THERMOLITHOTROPHICUS
SUBUNIT GAMMA

(Methanothermococcus
thermolithotrophicus) 		PF02240
(MCR_gamma) 		4 GLU C 134
ARG C  46
ARG C  84
GLU C 130
 None
 1.24A 5odcB-5n1qC:
0.0
5odcC-5n1qC:
0.0
5odcG-5n1qC:
0.0		 5odcB-5n1qC:
24.31
5odcC-5n1qC:
19.48
5odcG-5n1qC:
16.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n28 METHYL-COENZYME M
REDUCTASE, GAMMA
SUBUNIT

(Methanotorris
formicicus) 		PF02240
(MCR_gamma) 		4 GLU C 134
ARG C  46
ARG C  84
GLU C 130
 None
 1.25A 5odcB-5n28C:
0.0
5odcC-5n28C:
0.0
5odcG-5n28C:
0.0		 5odcB-5n28C:
20.73
5odcC-5n28C:
19.70
5odcG-5n28C:
18.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t5i TUNGSTEN
FORMYLMETHANOFURAN
DEHYDROGENASE
SUBUNIT B
TUNGSTEN-CONTAINING
FORMYLMETHANOFURAN
DEHYDROGENASE 2
SUBUNIT C

(Methanothermobacter
sp. CaT2;
Methanothermobacter
wolfeii) 		PF00384
(Molybdopterin)
PF01493
(GXGXG) 		4 GLU C 217
ARG B 205
ARG C 199
GLU B 208
 None
 1.47A 5odcB-5t5iC:
undetectable
5odcC-5t5iC:
undetectable
5odcG-5t5iC:
2.0		 5odcB-5t5iC:
23.44
5odcC-5t5iC:
18.66
5odcG-5t5iC:
20.06