SIMILAR PATTERNS OF AMINO ACIDS FOR 5NN6_A_MIGA1013

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g3n ALPHA-GLUCOSIDASE

(Sulfolobus
solfataricus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		9 ASP A 212
ILE A 249
TRP A 284
TRP A 318
ASP A 320
MET A 321
TRP A 413
PHE A 449
HIS A 480
 None
None
None
None
None
BOG  A2000 ( 4.0A)
None
None
None
 0.85A 5nn6A-2g3nA:
40.5		 5nn6A-2g3nA:
25.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g3n ALPHA-GLUCOSIDASE

(Sulfolobus
solfataricus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		9 ASP A 212
ILE A 249
TRP A 284
TRP A 318
ASP A 320
TRP A 413
ASP A 416
PHE A 449
HIS A 480
 None
None
None
None
None
None
BOG  A2000 (-3.0A)
None
None
 0.69A 5nn6A-2g3nA:
40.5		 5nn6A-2g3nA:
25.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2x2i ALPHA-1,4-GLUCAN
LYASE ISOZYME 1

(Gracilariopsis
lemaneiformis) 		PF01055
(Glyco_hydro_31) 		8 ASP A 412
TRP A 551
ASP A 553
MET A 554
TRP A 662
ASP A 665
PHE A 698
HIS A 731
 QPS  A1050 (-3.2A)
QPS  A1050 (-4.8A)
QPS  A1050 (-3.1A)
QPS  A1050 (-3.1A)
QPS  A1050 (-4.6A)
QPS  A1050 (-2.7A)
QPS  A1050 (-4.3A)
QPS  A1050 (-4.3A)
 0.70A 5nn6A-2x2iA:
2.2		 5nn6A-2x2iA:
24.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xvg ALPHA XYLOSIDASE

(Cellvibrio
japonicus) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF17137
(DUF5110) 		7 ASP A 470
TRP A 580
ASP A 582
TRP A 656
ASP A 659
PHE A 692
HIS A 740
 None
 0.44A 5nn6A-2xvgA:
34.1		 5nn6A-2xvgA:
24.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xvg ALPHA XYLOSIDASE

(Cellvibrio
japonicus) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF17137
(DUF5110) 		5 TRP A 471
ASP A 470
TRP A 511
PHE A 692
HIS A 740
 EDO  A1997 ( 4.5A)
None
None
None
None
 1.05A 5nn6A-2xvgA:
34.1		 5nn6A-2xvgA:
24.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xvg ALPHA XYLOSIDASE

(Cellvibrio
japonicus) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF17137
(DUF5110) 		7 TRP A 471
ASP A 470
TRP A 580
TRP A 656
ASP A 659
PHE A 692
HIS A 740
 EDO  A1997 ( 4.5A)
None
None
None
None
None
None
 0.74A 5nn6A-2xvgA:
34.1		 5nn6A-2xvgA:
24.86
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ctt MALTASE-GLUCOAMYLASE

(Homo sapiens) 		PF00088
(Trefoil)
PF01055
(Glyco_hydro_31)
PF16863
(NtCtMGAM_N) 		10 ASP A 327
ILE A 364
TRP A 406
TRP A 441
ASP A 443
MET A 444
TRP A 539
ASP A 542
PHE A 575
HIS A 600
 3CU  A1001 (-2.7A)
3CU  A1001 (-4.5A)
None
3CU  A1001 (-4.9A)
3CU  A1001 (-2.7A)
3CU  A1001 ( 3.9A)
3CU  A1001 (-4.6A)
3CU  A1001 ( 2.5A)
3CU  A1001 (-4.5A)
3CU  A1001 (-3.9A)
 0.71A 5nn6A-3cttA:
51.5		 5nn6A-3cttA:
44.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lkb PROBABLE
BRANCHED-CHAIN AMINO
ACID ABC
TRANSPORTER, AMINO
ACID BINDING PROTEIN

(Thermus
thermophilus) 		PF13458
(Peripla_BP_6) 		5 LEU A 121
ILE A 111
ASP A 112
ASP A 162
PHE A 378
 None
 1.39A 5nn6A-3lkbA:
undetectable		 5nn6A-3lkbA:
17.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3lpp SUCRASE-ISOMALTASE

(Homo sapiens) 		PF00088
(Trefoil)
PF01055
(Glyco_hydro_31)
PF16863
(NtCtMGAM_N) 		10 TRP A 327
ASP A 355
ILE A 392
TRP A 435
TRP A 470
ASP A 472
MET A 473
TRP A 568
PHE A 604
HIS A 629
 TRS  A6001 ( 3.8A)
TRS  A6001 (-2.9A)
None
TRS  A6001 ( 4.6A)
None
TRS  A6001 (-3.2A)
TRS  A6001 ( 3.7A)
None
TRS  A6001 (-4.4A)
TRS  A6001 (-4.2A)
 0.68A 5nn6A-3lppA:
52.1		 5nn6A-3lppA:
42.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3lpp SUCRASE-ISOMALTASE

(Homo sapiens) 		PF00088
(Trefoil)
PF01055
(Glyco_hydro_31)
PF16863
(NtCtMGAM_N) 		10 TRP A 327
ASP A 355
ILE A 392
TRP A 435
TRP A 470
ASP A 472
TRP A 568
ASP A 571
PHE A 604
HIS A 629
 TRS  A6001 ( 3.8A)
TRS  A6001 (-2.9A)
None
TRS  A6001 ( 4.6A)
None
TRS  A6001 (-3.2A)
None
TRS  A6001 ( 3.7A)
TRS  A6001 (-4.4A)
TRS  A6001 (-4.2A)
 0.62A 5nn6A-3lppA:
52.1		 5nn6A-3lppA:
42.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3poc ALPHA-GLUCOSIDASE

(Blautia obeum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		9 TRP A 169
ASP A 197
ILE A 234
TRP A 271
MET A 308
TRP A 417
ASP A 420
PHE A 453
HIS A 478
 ACR  A 664 (-3.7A)
ACR  A 664 (-2.9A)
None
ACR  A 664 (-4.6A)
ACR  A 664 ( 3.8A)
ACR  A 664 (-4.6A)
ACR  A 664 (-2.8A)
ACR  A 664 (-4.4A)
ACR  A 664 (-4.2A)
 0.74A 5nn6A-3pocA:
38.2		 5nn6A-3pocA:
24.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3poc ALPHA-GLUCOSIDASE

(Blautia obeum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		7 TRP A 169
ASP A 197
ILE A 234
TRP A 271
TRP A 305
PHE A 453
HIS A 478
 ACR  A 664 (-3.7A)
ACR  A 664 (-2.9A)
None
ACR  A 664 (-4.6A)
None
ACR  A 664 (-4.4A)
ACR  A 664 (-4.2A)
 0.95A 5nn6A-3pocA:
38.2		 5nn6A-3pocA:
24.72
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3top MALTASE-GLUCOAMYLASE
, INTESTINAL

(Homo sapiens) 		PF00088
(Trefoil)
PF01055
(Glyco_hydro_31)
PF16863
(NtCtMGAM_N) 		10 ASP A1279
ILE A1315
TRP A1355
TRP A1418
ASP A1420
MET A1421
TRP A1523
ASP A1526
PHE A1559
HIS A1584
 ACR  A   1 (-3.2A)
None
ACR  A   1 (-4.4A)
None
ACR  A   1 (-3.6A)
ACR  A   1 (-3.5A)
ACR  A   1 (-4.5A)
ACR  A   1 (-2.8A)
ACR  A   1 (-4.3A)
ACR  A   1 (-3.9A)
 0.71A 5nn6A-3topA:
48.3		 5nn6A-3topA:
39.58
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wel ALPHA-GLUCOSIDASE

(Beta vulgaris) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF16863
(NtCtMGAM_N) 		11 TRP A 329
ASP A 357
ILE A 396
TRP A 432
TRP A 467
ASP A 469
MET A 470
TRP A 565
ASP A 568
PHE A 601
HIS A 626
 ACR  A1001 (-4.1A)
ACR  A1001 (-3.0A)
ACR  A1001 (-4.9A)
ACR  A1001 ( 4.6A)
None
ACR  A1001 (-3.2A)
ACR  A1001 (-3.3A)
ACR  A1001 (-4.8A)
ACR  A1001 (-2.7A)
ACR  A1001 (-4.3A)
ACR  A1001 (-4.1A)
 0.69A 5nn6A-3welA:
59.8		 5nn6A-3welA:
37.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b9y ALPHA-GLUCOSIDASE,
PUTATIVE, ADG31B

(Cellvibrio
japonicus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF16338
(DUF4968)
PF17137
(DUF5110) 		9 ASP A 299
LEU A 300
ILE A 341
TRP A 410
ASP A 412
TRP A 477
ASP A 480
PHE A 513
HIS A 540
 None
 0.63A 5nn6A-4b9yA:
45.0		 5nn6A-4b9yA:
26.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xmm NUCLEOPORIN NUP145

(Saccharomyces
cerevisiae) 		PF12110
(Nup96) 		5 TRP B 235
ASP B 231
LEU B 234
ASP B 447
PHE B 184
 None
 1.20A 5nn6A-4xmmB:
undetectable		 5nn6A-4xmmB:
21.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5djw ALPHA-GLUCOSIDASE II

(Bacteroides
thetaiotaomicron) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF17137
(DUF5110) 		5 ASP A 211
TRP A 285
ASP A 321
ASP A 401
PHE A 434
 None
 1.39A 5nn6A-5djwA:
37.9		 5nn6A-5djwA:
29.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5djw ALPHA-GLUCOSIDASE II

(Bacteroides
thetaiotaomicron) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF17137
(DUF5110) 		5 ASP A 211
TRP A 319
ASP A 321
ASP A 401
PHE A 434
 None
 1.46A 5nn6A-5djwA:
37.9		 5nn6A-5djwA:
29.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dkx ALPHA
GLUCOSIDASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF17137
(DUF5110) 		10 TRP A 415
ASP A 443
ILE A 480
TRP A 517
TRP A 554
ASP A 556
MET A 557
TRP A 630
PHE A 666
HIS A 691
 None
TRS  A1001 (-2.9A)
None
TRS  A1001 ( 4.9A)
TRS  A1001 (-4.9A)
TRS  A1001 (-3.2A)
TRS  A1001 (-3.5A)
None
TRS  A1001 (-4.5A)
TRS  A1001 (-4.0A)
 0.77A 5nn6A-5dkxA:
48.3		 5nn6A-5dkxA:
28.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dkx ALPHA
GLUCOSIDASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF17137
(DUF5110) 		10 TRP A 415
ASP A 443
ILE A 480
TRP A 554
ASP A 556
MET A 557
TRP A 630
ASP A 633
PHE A 666
HIS A 691
 None
TRS  A1001 (-2.9A)
None
TRS  A1001 (-4.9A)
TRS  A1001 (-3.2A)
TRS  A1001 (-3.5A)
None
TRS  A1001 (-2.8A)
TRS  A1001 (-4.5A)
TRS  A1001 (-4.0A)
 0.61A 5nn6A-5dkxA:
48.3		 5nn6A-5dkxA:
28.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f7c ALPHA-GLUCOSIDASE

(Bacteroides
thetaiotaomicron) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		6 ASP A 348
ASP A 460
TRP A 520
ASP A 523
PHE A 556
HIS A 588
 None
 0.45A 5nn6A-5f7cA:
37.3		 5nn6A-5f7cA:
23.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f7s GLYCOSIDE HYDROLASE
FAMILY 31

(Trueperella
pyogenes) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		5 ASP A 467
TRP A 529
ASP A 532
PHE A 565
HIS A 591
 CA  A 805 (-2.9A)
None
CA  A 805 ( 4.6A)
None
None
 0.61A 5nn6A-5f7sA:
37.2		 5nn6A-5f7sA:
23.17
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5hjr NEUTRAL
ALPHA-GLUCOSIDASE AB

(Mus musculus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		10 TRP A 423
ASP A 451
ILE A 488
TRP A 525
TRP A 562
ASP A 564
MET A 565
TRP A 637
PHE A 673
HIS A 698
 5GF  A1021 (-3.1A)
5GF  A1021 (-2.0A)
None
5GF  A1021 (-3.7A)
5GF  A1021 (-4.6A)
5GF  A1021 (-2.1A)
5GF  A1021 (-2.6A)
5GF  A1021 ( 4.6A)
5GF  A1021 (-3.6A)
5GF  A1021 (-4.0A)
 0.80A 5nn6A-5hjrA:
42.3		 5nn6A-5hjrA:
32.03
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5hjr NEUTRAL
ALPHA-GLUCOSIDASE AB

(Mus musculus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2) 		9 TRP A 423
ASP A 451
ILE A 488
TRP A 562
ASP A 564
TRP A 637
ASP A 640
PHE A 673
HIS A 698
 5GF  A1021 (-3.1A)
5GF  A1021 (-2.0A)
None
5GF  A1021 (-4.6A)
5GF  A1021 (-2.1A)
5GF  A1021 ( 4.6A)
5GF  A1021 (-2.6A)
5GF  A1021 (-3.6A)
5GF  A1021 (-4.0A)
 0.47A 5nn6A-5hjrA:
42.3		 5nn6A-5hjrA:
32.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jou ALPHA-XYLOSIDASE
BOGH31A

(Bacteroides
ovatus) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF17137
(DUF5110) 		5 TRP A 442
ASP A 441
TRP A 482
PHE A 663
HIS A 709
 EDO  A1008 (-3.7A)
EDO  A1008 (-2.8A)
None
EDO  A1008 (-4.3A)
EDO  A1008 (-4.0A)
 1.09A 5nn6A-5jouA:
36.7		 5nn6A-5jouA:
24.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jou ALPHA-XYLOSIDASE
BOGH31A

(Bacteroides
ovatus) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF17137
(DUF5110) 		8 TRP A 442
ASP A 441
TRP A 551
ASP A 553
TRP A 627
ASP A 630
PHE A 663
HIS A 709
 EDO  A1008 (-3.7A)
EDO  A1008 (-2.8A)
None
EDO  A1008 (-2.7A)
None
EDO  A1008 (-3.0A)
EDO  A1008 (-4.3A)
EDO  A1008 (-4.0A)
 0.79A 5nn6A-5jouA:
36.7		 5nn6A-5jouA:
24.81
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5nn8 LYSOSOMAL
ALPHA-GLUCOSIDASE

(Homo sapiens) 		no annotation 12 TRP A 376
ASP A 404
LEU A 405
ILE A 441
TRP A 481
TRP A 516
ASP A 518
MET A 519
TRP A 613
ASP A 616
PHE A 649
HIS A 674
 ACR  A1015 ( 4.6A)
ACR  A1015 (-3.0A)
ACR  A1015 (-4.0A)
ACR  A1015 (-4.3A)
ACR  A1015 ( 4.6A)
None
ACR  A1015 (-3.1A)
ACR  A1015 (-3.3A)
ACR  A1015 (-4.8A)
ACR  A1015 (-2.7A)
ACR  A1015 (-4.3A)
ACR  A1015 (-4.0A)
 0.63A 5nn6A-5nn8A:
60.6		 5nn6A-5nn8A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x7s GLYCOSIDE HYDROLASE
FAMILY 31
ALPHA-GLUCOSIDASE

(Paenibacillus
sp. 598K) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF16990
(CBM_35)
PF17137
(DUF5110) 		6 TRP A 427
ASP A 429
TRP A 488
ASP A 491
PHE A 533
HIS A 565
 None
 0.52A 5nn6A-5x7sA:
19.5		 5nn6A-5x7sA:
21.52