SIMILAR PATTERNS OF AMINO ACIDS FOR 5NN4_A_SC2A1016

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ugp NITRILE HYDRATASE
BETA SUBUNIT

(Pseudonocardia
thermophila) 		PF02211
(NHase_beta) 		4 HIS B  78
GLY B  80
ARG B  82
THR B  83
 None
 1.35A 5nn4A-1ugpB:
undetectable		 5nn4A-1ugpB:
12.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w8i PUTATIVE VAPC
RIBONUCLEASE AF_1683

(Archaeoglobus
fulgidus) 		PF01850
(PIN) 		4 HIS A  20
GLY A 130
ARG A 131
THR A 128
 None
 1.37A 5nn4A-1w8iA:
undetectable		 5nn4A-1w8iA:
10.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ln9 IMMUNOGLOBULIN HEAVY
CHAIN ANTIBODY
VARIABLE DOMAIN B10

(Camelidae) 		PF07686
(V-set) 		4 HIS A  34
GLY A  99
ARG A  32
THR A 106
 None
None
GOL  A 139 ( 3.0A)
GOL  A 139 (-4.4A)
 1.42A 5nn4A-3ln9A:
2.0		 5nn4A-3ln9A:
9.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zfp N-TERMINAL PROTEASE
NPRO

(Pestivirus H) 		PF05550
(Peptidase_C53) 		4 HIS A 130
GLY A 119
ARG A 120
THR A  44
 None
 1.38A 5nn4A-3zfpA:
0.0		 5nn4A-3zfpA:
9.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4dg8 PA1221

(Pseudomonas
aeruginosa) 		PF00501
(AMP-binding) 		4 HIS A  24
GLY A 186
ARG A 189
THR A 313
 None
 0.92A 5nn4A-4dg8A:
0.3		 5nn4A-4dg8A:
21.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4dpk MALONYL-COA/SUCCINYL
-COA REDUCTASE

(Sulfurisphaera
tokodaii) 		PF01118
(Semialdhyde_dh)
PF02774
(Semialdhyde_dhC) 		4 HIS A 334
GLY A 247
ARG A 304
THR A 244
 None
 1.41A 5nn4A-4dpkA:
0.6		 5nn4A-4dpkA:
17.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fbl LIPS LIPOLYTIC
ENZYME

(unidentified) 		PF12146
(Hydrolase_4) 		4 HIS A  56
GLY A  88
ARG A  83
THR A  89
 None
 1.45A 5nn4A-4fblA:
1.8		 5nn4A-4fblA:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h9k HOG CHOLERA VIRUS

(Pestivirus C) 		PF05550
(Peptidase_C53) 		4 HIS A 130
GLY A 119
ARG A 120
THR A  44
 None
None
SO4  A 203 (-2.8A)
None
 1.33A 5nn4A-4h9kA:
0.0		 5nn4A-4h9kA:
12.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lhe THERMOSTABLE
MONOACYLGLYCEROL
LIPASE

(Bacillus sp.
H-257) 		PF12146
(Hydrolase_4) 		4 HIS A  27
GLY A  59
ARG A  54
THR A  60
 None
 1.47A 5nn4A-4lheA:
1.8		 5nn4A-4lheA:
14.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rbn SUCROSE
SYNTHASE:GLYCOSYL
TRANSFERASES GROUP 1

(Nitrosomonas
europaea) 		PF00534
(Glycos_transf_1)
PF00862
(Sucrose_synth) 		4 HIS A 230
GLY A 229
ARG A 234
THR A 238
 None
 1.49A 5nn4A-4rbnA:
2.3		 5nn4A-4rbnA:
21.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z2a FURIN

(Homo sapiens) 		PF00082
(Peptidase_S8)
PF01483
(P_proprotein) 		4 HIS A 486
GLY A 572
ARG A 391
THR A 573
 None
 1.23A 5nn4A-4z2aA:
undetectable		 5nn4A-4z2aA:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zi5 P91

(metagenome) 		PF01738
(DLH) 		4 HIS A  65
GLY A  66
ARG A  93
THR A  13
 None
 1.02A 5nn4A-4zi5A:
undetectable		 5nn4A-4zi5A:
15.38
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5nn8 LYSOSOMAL
ALPHA-GLUCOSIDASE

(Homo sapiens) 		no annotation 4 HIS A 432
GLY A 435
ARG A 437
THR A 834
 GOL  A1038 (-3.6A)
GOL  A1038 ( 4.0A)
GOL  A1038 (-3.5A)
GOL  A1038 (-3.3A)
 0.13A 5nn4A-5nn8A:
66.7		 5nn4A-5nn8A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x7s GLYCOSIDE HYDROLASE
FAMILY 31
ALPHA-GLUCOSIDASE

(Paenibacillus
sp. 598K) 		PF01055
(Glyco_hydro_31)
PF16338
(DUF4968)
PF16990
(CBM_35)
PF17137
(DUF5110) 		4 HIS A 565
GLY A 532
ARG A 572
THR A 494
 None
 1.44A 5nn4A-5x7sA:
31.7		 5nn4A-5x7sA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xks THERMOSTABLE
MONOACYLGLYCEROL
LIPASE

(Geobacillus sp.
12AMOR1) 		no annotation 4 HIS A  27
GLY A  59
ARG A  54
THR A  60
 None
 1.46A 5nn4A-5xksA:
1.7		 5nn4A-5xksA:
7.43