SIMILAR PATTERNS OF AMINO ACIDS FOR 5MQT_C_STIC302_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cyg CYCLODEXTRIN
GLUCANOTRANSFERASE

(Geobacillus
stearothermophilus) 		PF00128
(Alpha-amylase)
PF00686
(CBM_20)
PF01833
(TIG)
PF02806
(Alpha-amylase_C) 		5 GLU A 149
VAL A  80
PRO A 134
LEU A 196
TYR A 206
 None
 1.36A 5mqtC-1cygA:
undetectable		 5mqtC-1cygA:
18.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gco GLUCOSE
DEHYDROGENASE

(Bacillus
megaterium) 		PF13561
(adh_short_C2) 		5 GLU A 210
PRO A 188
ARG A 206
GLU A 223
GLU A 220
 None
NAD  A 601 (-4.2A)
None
None
None
 1.39A 5mqtC-1gcoA:
2.8		 5mqtC-1gcoA:
20.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gpr GLUCOSE PERMEASE

(Bacillus
subtilis) 		PF00358
(PTS_EIIA_1) 		5 PRO A  18
GLN A 110
ARG A 105
LEU A 112
GLU A  13
 None
 1.07A 5mqtC-1gprA:
undetectable		 5mqtC-1gprA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1h3g CYCLOMALTODEXTRINASE

(Flavobacterium
sp. 92) 		PF00128
(Alpha-amylase)
PF09087
(Cyc-maltodext_N)
PF10438
(Cyc-maltodext_C) 		5 ILE A 540
VAL A 591
PRO A 566
LEU A 562
GLU A 594
 None
 1.34A 5mqtC-1h3gA:
undetectable		 5mqtC-1h3gA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1hz4 MALT REGULATORY
PROTEIN

(Escherichia
coli) 		no annotation 5 GLU A  66
GLN A  76
ARG A  50
LEU A  73
GLU A  40
 None
 1.43A 5mqtC-1hz4A:
1.8		 5mqtC-1hz4A:
23.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lxy ARGININE DEIMINASE

(Mycoplasma
arginini) 		PF02274
(Amidinotransf) 		5 VAL A 128
PRO A 162
ARG A 125
LEU A  24
GLU A  31
 None
 1.29A 5mqtC-1lxyA:
0.1		 5mqtC-1lxyA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mro METHYL-COENZYME M
REDUCTASE

(Methanothermobacter
marburgensis) 		PF02240
(MCR_gamma) 		5 ILE C 123
PRO C  21
GLU C  22
LEU C  25
TYR C 109
 None
 1.44A 5mqtC-1mroC:
undetectable		 5mqtC-1mroC:
24.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z3i SIMILAR TO
RAD54-LIKE

(Danio rerio) 		PF00176
(SNF2_N)
PF00271
(Helicase_C) 		5 ILE X 562
VAL X 583
PRO X 486
GLU X 485
TYR X 532
 None
 1.39A 5mqtC-1z3iX:
undetectable		 5mqtC-1z3iX:
17.03
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2a30 DEOXYCYTIDINE KINASE

(Homo sapiens) 		PF01712
(dNK) 		5 GLU A  53
MET A  85
PRO A  89
GLN A  97
LEU A 141
 DCZ  A 302 (-3.0A)
DCZ  A 302 ( 4.3A)
None
DCZ  A 302 (-3.2A)
None
 0.99A 5mqtC-2a30A:
33.5		 5mqtC-2a30A:
84.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2a30 DEOXYCYTIDINE KINASE

(Homo sapiens) 		PF01712
(dNK) 		6 ILE A  30
GLU A  53
GLN A  97
ARG A 128
GLU A 196
GLU A 197
 DCZ  A 302 ( 4.3A)
DCZ  A 302 (-3.0A)
DCZ  A 302 (-3.2A)
DCZ  A 302 (-4.1A)
None
DCZ  A 302 (-3.5A)
 1.15A 5mqtC-2a30A:
33.5		 5mqtC-2a30A:
84.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2a30 DEOXYCYTIDINE KINASE

(Homo sapiens) 		PF01712
(dNK) 		8 ILE A  30
GLU A  53
PRO A  89
GLN A  97
ARG A 128
LEU A 141
GLU A 197
TYR A 204
 DCZ  A 302 ( 4.3A)
DCZ  A 302 (-3.0A)
None
DCZ  A 302 (-3.2A)
DCZ  A 302 (-4.1A)
None
DCZ  A 302 (-3.5A)
None
 0.79A 5mqtC-2a30A:
33.5		 5mqtC-2a30A:
84.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2dgk GLUTAMATE
DECARBOXYLASE BETA

(Escherichia
coli) 		PF00282
(Pyridoxal_deC) 		5 ILE A 242
MET A 194
PRO A 191
LEU A 227
GLU A 218
 None
 1.22A 5mqtC-2dgkA:
undetectable		 5mqtC-2dgkA:
20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eho GINS COMPLEX SUBUNIT
3

(Homo sapiens) 		PF05916
(Sld5) 		5 ILE D 134
PRO D  33
GLU D  67
GLU D 130
TYR D  92
 None
 1.35A 5mqtC-2ehoD:
undetectable		 5mqtC-2ehoD:
20.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jcs DEOXYNUCLEOSIDE
KINASE

(Drosophila
melanogaster) 		PF01712
(dNK) 		6 ILE A  29
PRO A  73
GLN A  81
ARG A 105
GLU A 172
TYR A 179
 TTP  A1210 (-3.9A)
None
TTP  A1210 (-3.0A)
TTP  A1210 (-3.7A)
TTP  A1210 (-3.6A)
None
 0.79A 5mqtC-2jcsA:
24.2		 5mqtC-2jcsA:
29.69
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2ocp DEOXYGUANOSINE
KINASE

(Homo sapiens) 		PF01712
(dNK) 		7 ILE A  47
PRO A 103
GLN A 111
ARG A 142
LEU A 155
GLU A 211
TYR A 218
 DTP  A 301 (-3.8A)
None
DTP  A 301 (-2.9A)
DTP  A 301 (-3.2A)
None
DTP  A 301 (-3.5A)
None
 0.74A 5mqtC-2ocpA:
30.5		 5mqtC-2ocpA:
45.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ols PHOSPHOENOLPYRUVATE
SYNTHASE

(Neisseria
meningitidis) 		PF00391
(PEP-utilizers)
PF01326
(PPDK_N)
PF02896
(PEP-utilizers_C) 		5 ILE A 516
PRO A 647
GLU A 681
LEU A 510
GLU A 626
 None
 1.42A 5mqtC-2olsA:
undetectable		 5mqtC-2olsA:
17.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xok ATP SYNTHASE SUBUNIT
GAMMA, MITOCHONDRIAL

(Saccharomyces
cerevisiae) 		PF00231
(ATP-synt) 		5 ILE G  39
PRO G 138
GLU G 142
LEU G 219
GLU G  35
 None
 1.47A 5mqtC-2xokG:
undetectable		 5mqtC-2xokG:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zj8 PUTATIVE SKI2-TYPE
HELICASE

(Pyrococcus
furiosus) 		PF00270
(DEAD)
PF00271
(Helicase_C)
PF14520
(HHH_5) 		5 GLU A 544
ARG A 656
LEU A 578
GLU A 588
TYR A 593
 None
 1.50A 5mqtC-2zj8A:
2.9		 5mqtC-2zj8A:
18.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a1z HEMOLYMPH JUVENILE
HORMONE BINDING
PROTEIN

(Bombyx mori) 		PF06585
(JHBP) 		5 ILE A 202
VAL A 126
GLN A  73
LEU A  70
GLU A 198
 None
 1.38A 5mqtC-3a1zA:
undetectable		 5mqtC-3a1zA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3blw ISOCITRATE
DEHYDROGENASE [NAD]
SUBUNIT 1

(Saccharomyces
cerevisiae) 		PF00180
(Iso_dh) 		5 ILE A 280
PRO A 271
GLU A 270
ARG A 327
GLU A  31
 None
 1.41A 5mqtC-3blwA:
1.1		 5mqtC-3blwA:
21.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f2a PROTO-ONCOGENE
SERINE/THREONINE-PRO
TEIN KINASE PIM-1

(Homo sapiens) 		PF00069
(Pkinase) 		5 ILE A 230
VAL A 253
PRO A 279
GLU A 283
LEU A 266
 None
 1.36A 5mqtC-3f2aA:
undetectable		 5mqtC-3f2aA:
23.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hdu PUTATIVE
THIOESTERASE

(Syntrophus
aciditrophicus) 		PF03061
(4HBT) 		5 GLU A  20
VAL A  33
PRO A  38
GLU A  83
LEU A  11
 None
 1.27A 5mqtC-3hduA:
undetectable		 5mqtC-3hduA:
21.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3i8b XYLULOSE KINASE

(Bifidobacterium
adolescentis) 		PF00370
(FGGY_N)
PF02782
(FGGY_C) 		5 ILE A 236
GLU A 234
ARG A 213
LEU A 143
GLU A 224
 None
 1.42A 5mqtC-3i8bA:
undetectable		 5mqtC-3i8bA:
20.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n3b RIBONUCLEOSIDE-DIPHO
SPHATE REDUCTASE 2
SUBUNIT BETA

(Escherichia
coli) 		no annotation 5 PRO B  33
GLU B  34
LEU B 184
GLU B  98
TYR B 105
 None
None
None
MN  B 321 ( 2.4A)
None
 1.22A 5mqtC-3n3bB:
undetectable		 5mqtC-3n3bB:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tho EXONUCLEASE,
PUTATIVE

(Thermotoga
maritima) 		PF00149
(Metallophos) 		5 ILE B 265
VAL B  50
MET B  81
LEU B  55
GLU B  44
 None
 1.28A 5mqtC-3thoB:
undetectable		 5mqtC-3thoB:
25.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4a60 FATTY ACID-BINDING
PROTEIN 9 TESTIS
LIPID-BINDING
PROTEIN, TLBP,
TESTIS-TYPE FATTY
ACID-BINDING
PROTEIN, T-FABP

(Homo sapiens) 		PF00061
(Lipocalin) 		5 ILE A 105
GLU A  73
VAL A  81
GLU A 102
TYR A  20
 None
 1.42A 5mqtC-4a60A:
undetectable		 5mqtC-4a60A:
22.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4am3 POLYRIBONUCLEOTIDE
NUCLEOTIDYLTRANSFERA
SE

(Caulobacter
vibrioides) 		PF00013
(KH_1)
PF01138
(RNase_PH)
PF03725
(RNase_PH_C)
PF03726
(PNPase) 		5 GLU A 192
PRO A 126
ARG A 414
LEU A 167
GLU A  86
 None
 1.41A 5mqtC-4am3A:
undetectable		 5mqtC-4am3A:
15.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jo0 CMLA

(Streptomyces
venezuelae) 		PF12706
(Lactamase_B_2) 		5 ILE A 439
GLU A 377
MET A 311
LEU A 341
TYR A  22
 None
FE  A 601 ( 1.9A)
None
None
None
 1.24A 5mqtC-4jo0A:
undetectable		 5mqtC-4jo0A:
19.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lns ASPARAGINE
SYNTHETASE A

(Trypanosoma
brucei) 		PF03590
(AsnA) 		5 ILE A 163
MET A 324
GLU A 334
LEU A 265
GLU A 151
 None
 1.34A 5mqtC-4lnsA:
undetectable		 5mqtC-4lnsA:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4m0m PUTATIVE
UNCHARACTERIZED
PROTEIN

(Legionella
pneumophila) 		no annotation 5 GLU A 343
MET A 200
GLU A 234
ARG A 299
GLU A 196
 None
None
PO4  A 805 ( 4.4A)
None
None
 1.46A 5mqtC-4m0mA:
2.1		 5mqtC-4m0mA:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4q73 PROLINE
DEHYDROGENASE

(Bradyrhizobium
diazoefficiens) 		PF00171
(Aldedh)
PF01619
(Pro_dh)
PF14850
(Pro_dh-DNA_bdg) 		5 GLU A 874
VAL A 892
PRO A 773
GLU A 774
ARG A 855
 None
 1.42A 5mqtC-4q73A:
undetectable		 5mqtC-4q73A:
14.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xkm XYLOSE ISOMERASE

(Bacteroides
thetaiotaomicron) 		no annotation 5 GLU A 378
MET A 325
GLU A 282
LEU A 434
GLU A 370
 None
 1.18A 5mqtC-4xkmA:
1.4		 5mqtC-4xkmA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zhs ASPARTATE
SEMIALDEHYDE
DEHYDROGENASE

(Trichophyton
rubrum) 		no annotation 5 VAL D 122
PRO D 290
GLU D 312
GLU D 280
TYR D 277
 None
 1.33A 5mqtC-4zhsD:
2.0		 5mqtC-4zhsD:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h05 AMYP

(marine
metagenome) 		PF00128
(Alpha-amylase) 		5 GLU A 262
VAL A 299
PRO A 313
GLU A 314
GLU A 342
 None
 1.44A 5mqtC-5h05A:
undetectable		 5mqtC-5h05A:
18.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jaa ANTITOXIN IGA-2

(Vibrio cholerae) 		PF15731
(MqsA_antitoxin) 		5 GLU A  74
PRO A  95
GLU A  96
LEU A  98
GLU A  50
 None
 1.48A 5mqtC-5jaaA:
undetectable		 5mqtC-5jaaA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xtd NADH DEHYDROGENASE
[UBIQUINONE] 1 ALPHA
SUBCOMPLEX SUBUNIT
10, MITOCHONDRIAL

(Homo sapiens) 		PF06212
(GRIM-19) 		6 ILE w  66
PRO w 121
GLN w 132
ARG w 161
GLU w 226
TYR w 233
 None
 1.09A 5mqtC-5xtdw:
17.3		 5mqtC-5xtdw:
22.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bk1 UDP-GLYCOSYLTRANSFER
ASE 79

(Oryza sativa) 		no annotation 5 GLU A 211
MET A 232
GLU A 225
LEU A 141
GLU A 153
 None
 1.32A 5mqtC-6bk1A:
2.2		 5mqtC-6bk1A:
13.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6e29 -

(-) 		no annotation 5 GLU D 320
GLU D 261
ARG D  31
LEU D 230
GLU D 224
 None
 1.21A 5mqtC-6e29D:
undetectable		 5mqtC-6e29D:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ezn DOLICHYL-DIPHOSPHOOL
IGOSACCHARIDE--PROTE
IN
GLYCOSYLTRANSFERASE
SUBUNIT WBP1

(Saccharomyces
cerevisiae) 		no annotation 5 GLU G 183
GLU G 106
GLN G 187
LEU G 224
GLU G 128
 None
 1.37A 5mqtC-6eznG:
undetectable		 5mqtC-6eznG:
14.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6g2j NADH DEHYDROGENASE
[UBIQUINONE] 1 ALPHA
SUBCOMPLEX SUBUNIT
10, MITOCHONDRIAL

(Mus musculus) 		no annotation 6 ILE O  31
GLU O  53
GLN O  97
ARG O 126
GLU O 191
TYR O 198
 ADP  O 401 (-4.0A)
ADP  O 401 ( 4.7A)
ADP  O 401 (-3.5A)
ADP  O 401 ( 4.3A)
ADP  O 401 (-3.2A)
None
 1.04A 5mqtC-6g2jO:
undetectable		 5mqtC-6g2jO:
13.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6g2j NADH DEHYDROGENASE
[UBIQUINONE] 1 ALPHA
SUBCOMPLEX SUBUNIT
10, MITOCHONDRIAL

(Mus musculus) 		no annotation 5 ILE O  31
PRO O  86
ARG O 126
GLU O 191
TYR O 198
 ADP  O 401 (-4.0A)
None
ADP  O 401 ( 4.3A)
ADP  O 401 (-3.2A)
None
 1.02A 5mqtC-6g2jO:
undetectable		 5mqtC-6g2jO:
13.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6gbv PUTATIVE BLUE-LIGHT
PHOTORECEPTOR

(Dinoroseobacter
shibae) 		no annotation 5 ILE A 121
GLU A  32
VAL A  37
PRO A  48
ARG A 119
 None
 1.42A 5mqtC-6gbvA:
undetectable		 5mqtC-6gbvA:
undetectable