SIMILAR PATTERNS OF AMINO ACIDS FOR 5JSD_C_1GNC611

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mns MANDELATE RACEMASE

(Pseudomonas
putida) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		4 GLU A 222
GLU A 247
VAL A  29
THR A  24
 None
MG  A 360 (-2.5A)
None
None
 1.39A 5jsdA-1mnsA:
0.0
5jsdC-1mnsA:
0.0		 5jsdA-1mnsA:
19.22
5jsdC-1mnsA:
19.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bu1 LIPOCALIN

(Argas
monolakensis) 		PF02098
(His_binding) 		4 GLU A  28
GLU A 103
VAL A  37
THR A  35
 None
 1.18A 5jsdA-3bu1A:
0.0
5jsdC-3bu1A:
0.0		 5jsdA-3bu1A:
11.99
5jsdC-3bu1A:
11.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ccd GALACTOCEREBROSIDASE

(Mus musculus) 		PF02057
(Glyco_hydro_59)
PF17387
(Glyco_hydro_59M) 		4 GLU A  85
GLU A 114
VAL A 294
THR A  51
 None
 1.42A 5jsdA-4ccdA:
1.9
5jsdC-4ccdA:
0.7		 5jsdA-4ccdA:
21.30
5jsdC-4ccdA:
21.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d0f UNCHARACTERIZED
PROTEIN

([Candida]
glabrata) 		PF06202
(GDE_C)
PF14699
(hGDE_N)
PF14701
(hDGE_amylase)
PF14702
(hGDE_central) 		4 GLU A 631
GLU A 648
VAL A 979
THR A 886
 None
 1.22A 5jsdA-5d0fA:
2.6
5jsdC-5d0fA:
0.9		 5jsdA-5d0fA:
18.95
5jsdC-5d0fA:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i4q ELONGATION FACTOR TU

(Escherichia
coli) 		PF03143
(GTP_EFTU_D3)
PF03144
(GTP_EFTU_D2) 		4 GLU C 285
GLU C 286
VAL C 228
THR C 226
 None
 1.39A 5jsdA-5i4qC:
0.0
5jsdC-5i4qC:
0.0		 5jsdA-5i4qC:
14.11
5jsdC-5i4qC:
14.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wmm NRPS

(Micromonospora
sp. ML1) 		no annotation 4 GLU A 816
GLU A 822
VAL A 739
THR A 741
 None
 1.20A 5jsdA-5wmmA:
0.8
5jsdC-5wmmA:
0.6		 5jsdA-5wmmA:
8.90
5jsdC-5wmmA:
8.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wug BETA-GLUCOSIDASE

(Paenibacillus
barengoltzii) 		no annotation 4 GLU A 786
GLU A 556
VAL A 881
THR A 883
 None
 1.27A 5jsdA-5wugA:
0.5
5jsdC-5wugA:
0.6		 5jsdA-5wugA:
9.32
5jsdC-5wugA:
9.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6d0n CLC-TYPE
FLUORIDE/PROTON
ANTIPORTER

(Enterococcus
casseliflavus) 		no annotation 4 GLU A 318
GLU A 118
VAL A 171
THR A 357
 None
 1.11A 5jsdA-6d0nA:
undetectable
5jsdC-6d0nA:
undetectable		 5jsdA-6d0nA:
9.16
5jsdC-6d0nA:
9.16