SIMILAR PATTERNS OF AMINO ACIDS FOR 5IQD_D_RIOD600_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1k9x M32 CARBOXYPEPTIDASE

(Pyrococcus
furiosus) 		PF02074
(Peptidase_M32) 		5 GLU A 317
GLU A 314
VAL A 338
GLU A 336
TYR A 339
 None
 1.37A 5iqdD-1k9xA:
0.0		 5iqdD-1k9xA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2m7b UNCHARACTERIZED
PROTEIN

(Pseudomonas
putida) 		no annotation 5 GLU A  49
SER A  46
GLU A  47
GLU A  50
VAL A  67
 None
 1.47A 5iqdD-2m7bA:
undetectable		 5iqdD-2m7bA:
15.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vpq ACETYL-COA
CARBOXYLASE

(Staphylococcus
aureus) 		PF00289
(Biotin_carb_N)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		5 ASP A  22
GLU A 369
GLU A 301
VAL A  14
GLU A  11
 None
 1.42A 5iqdD-2vpqA:
0.8		 5iqdD-2vpqA:
23.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2f DNA POLYMERASE

(Pyrococcus
furiosus) 		PF00136
(DNA_pol_B)
PF03104
(DNA_pol_B_exo1) 		5 ASP A 315
TYR A 311
GLU A 288
GLU A 294
TYR A 291
 None
 1.34A 5iqdD-3a2fA:
3.1		 5iqdD-3a2fA:
18.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iz3 STRUCTURAL PROTEIN
VP1

(Cypovirus 1) 		no annotation 5 ASP B 870
SER B 886
SER B 878
VAL B 918
TYR B 897
 None
 1.50A 5iqdD-3iz3B:
1.3		 5iqdD-3iz3B:
13.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r84 SIALYLTRANSFERASE
0160

(Photobacterium
damselae) 		PF11477
(PM0188) 		5 SER A 225
TYR A 196
GLU A 194
SER A 222
TYR A 139
 None
 1.39A 5iqdD-4r84A:
0.0		 5iqdD-4r84A:
19.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r9v SIALYLTRANSFERASE
0160

(Photobacterium
damselae) 		PF11477
(PM0188) 		5 SER A 225
TYR A 196
GLU A 194
SER A 222
TYR A 139
 None
 1.41A 5iqdD-4r9vA:
0.0		 5iqdD-4r9vA:
20.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xpr ALPHA-GLUCOSIDASE

(Pseudopedobacter
saltans) 		PF01055
(Glyco_hydro_31)
PF17137
(DUF5110) 		5 SER A  83
TYR A  88
SER A  79
GLU A  81
GLU A 191
 None
 1.28A 5iqdD-4xprA:
1.5		 5iqdD-4xprA:
18.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ce5 TRIACYLGLYCEROL
LIPASE

(Geobacillus
thermocatenulatus) 		no annotation 5 TYR A 137
GLU A 134
SER A 131
GLU A 133
VAL A 143
 None
 1.47A 5iqdD-5ce5A:
0.0		 5iqdD-5ce5A:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6bck N49P7 FAB HEAVY
CHAIN OF N29P7 IGG
N49P7 FAB LIGHT
CHAIN FROM N49P7 IGG

(Homo sapiens;
Homo sapiens) 		no annotation
no annotation 		5 ASP H 144
SER H 120
GLU L 124
SER L 121
GLU L 160
 None
 1.47A 5iqdD-6bckH:
undetectable		 5iqdD-6bckH:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cey BIFUNCTIONAL AAC/APH

(Staphylococcus
aureus) 		no annotation 8 ASP A 374
SER A 376
TYR A 408
GLU A 411
SER A 413
GLU A 416
VAL A 444
GLU A 445
 GNP  A 500 (-4.6A)
None
None
None
None
None
None
None
 0.69A 5iqdD-6ceyA:
42.8		 5iqdD-6ceyA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cey BIFUNCTIONAL AAC/APH

(Staphylococcus
aureus) 		no annotation 9 ASP A 374
SER A 376
TYR A 408
GLU A 411
SER A 413
GLU A 416
VAL A 444
TYR A 448
GLU A 451
 GNP  A 500 (-4.6A)
None
None
None
None
None
None
None
None
 0.49A 5iqdD-6ceyA:
42.8		 5iqdD-6ceyA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cey BIFUNCTIONAL AAC/APH

(Staphylococcus
aureus) 		no annotation 7 TYR A 408
GLU A 411
SER A 413
GLU A 415
GLU A 416
VAL A 444
GLU A 445
 None
 0.96A 5iqdD-6ceyA:
42.8		 5iqdD-6ceyA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cey BIFUNCTIONAL AAC/APH

(Staphylococcus
aureus) 		no annotation 7 TYR A 408
GLU A 411
SER A 413
GLU A 415
GLU A 416
VAL A 444
TYR A 448
 None
 0.91A 5iqdD-6ceyA:
42.8		 5iqdD-6ceyA:
undetectable