SIMILAR PATTERNS OF AMINO ACIDS FOR 5INZ_D_DVAD2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jvb NAD(H)-DEPENDENT
ALCOHOL
DEHYDROGENASE

(Sulfolobus
solfataricus) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 GLY A  97
CYH A 112
ARG A 116
GLY A  99
 ZN  A 400 ( 4.6A)
ZN  A 400 ( 2.3A)
None
ZN  A 400 ( 4.8A)
 0.89A 5inzA-1jvbA:
undetectable
5inzC-1jvbA:
undetectable
5inzD-1jvbA:
undetectable		 5inzA-1jvbA:
7.04
5inzC-1jvbA:
7.04
5inzD-1jvbA:
7.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kyh HYPOTHETICAL 29.9
KDA PROTEIN IN
SIGY-CYDD INTERGENIC
REGION

(Bacillus
subtilis) 		PF01256
(Carb_kinase) 		4 GLY A  54
CYH A 227
ARG A  18
GLY A  56
 None
 1.44A 5inzA-1kyhA:
undetectable
5inzC-1kyhA:
undetectable
5inzD-1kyhA:
undetectable		 5inzA-1kyhA:
7.69
5inzC-1kyhA:
7.69
5inzD-1kyhA:
7.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qni NITROUS-OXIDE
REDUCTASE

(Marinobacter
hydrocarbonoclasticus) 		no annotation 4 GLY A  26
CYH A  78
ARG A  33
GLY A  30
 None
 1.32A 5inzA-1qniA:
undetectable
5inzC-1qniA:
undetectable
5inzD-1qniA:
undetectable		 5inzA-1qniA:
2.93
5inzC-1qniA:
2.93
5inzD-1qniA:
2.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cvj THIOREDOXIN
REDUCTASE RELATED
PROTEIN

(Thermus
thermophilus) 		PF00890
(FAD_binding_2)
PF07992
(Pyr_redox_2) 		4 GLY A 142
CYH A 105
ARG A 145
GLY A 159
 FAD  A2304 ( 4.1A)
None
None
None
 0.95A 5inzA-2cvjA:
undetectable
5inzC-2cvjA:
undetectable
5inzD-2cvjA:
undetectable		 5inzA-2cvjA:
13.25
5inzC-2cvjA:
13.25
5inzD-2cvjA:
13.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eer NAD-DEPENDENT
ALCOHOL
DEHYDROGENASE

(Sulfurisphaera
tokodaii) 		PF00107
(ADH_zinc_N)
PF08240
(ADH_N) 		4 GLY A  97
CYH A 112
ARG A 116
GLY A  99
 ZN  A 501 ( 4.6A)
ZN  A 501 (-2.3A)
None
ZN  A 501 ( 4.6A)
 1.01A 5inzA-2eerA:
undetectable
5inzC-2eerA:
undetectable
5inzD-2eerA:
undetectable		 5inzA-2eerA:
3.53
5inzC-2eerA:
3.53
5inzD-2eerA:
3.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a05 TRYPTOPHANYL-TRNA
SYNTHETASE

(Aeropyrum
pernix) 		PF00579
(tRNA-synt_1b) 		4 GLY A 298
CYH A 334
ARG A 287
GLY A 285
 SF4  A 373 ( 4.3A)
SF4  A 373 (-2.3A)
None
SF4  A 373 (-3.6A)
 1.29A 5inzA-3a05A:
undetectable
5inzC-3a05A:
undetectable
5inzD-3a05A:
undetectable		 5inzA-3a05A:
7.14
5inzC-3a05A:
7.14
5inzD-3a05A:
7.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jq3 LOMBRICINE KINASE

(Urechis caupo) 		PF00217
(ATP-gua_Ptrans)
PF02807
(ATP-gua_PtransN) 		4 GLY A 121
CYH A 268
ARG A 122
GLY A 277
 None
 0.96A 5inzA-3jq3A:
undetectable
5inzC-3jq3A:
undetectable
5inzD-3jq3A:
undetectable		 5inzA-3jq3A:
5.94
5inzC-3jq3A:
5.94
5inzD-3jq3A:
5.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ad8 DNA REPAIR PROTEIN
RECN

(Deinococcus
radiodurans) 		PF02463
(SMC_N) 		4 GLY A  55
CYH A  57
ARG A  33
GLY A  53
 None
 1.31A 5inzA-4ad8A:
undetectable
5inzC-4ad8A:
undetectable
5inzD-4ad8A:
undetectable		 5inzA-4ad8A:
2.96
5inzC-4ad8A:
2.96
5inzD-4ad8A:
2.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ak9 CPFTSY

(Physcomitrella
patens) 		PF00448
(SRP54)
PF02881
(SRP54_N) 		4 GLY A 313
CYH A 345
ARG A 342
GLY A 310
 None
 1.40A 5inzA-4ak9A:
undetectable
5inzC-4ak9A:
undetectable
5inzD-4ak9A:
undetectable		 5inzA-4ak9A:
4.35
5inzC-4ak9A:
4.35
5inzD-4ak9A:
4.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4tz5 PUTATIVE SECRETED
PROTEIN

(Streptomyces
sp. SirexAA-E) 		no annotation 4 GLY A 578
CYH A 542
ARG A 551
GLY A 576
 None
 1.21A 5inzA-4tz5A:
undetectable
5inzC-4tz5A:
undetectable
5inzD-4tz5A:
undetectable		 5inzA-4tz5A:
2.01
5inzC-4tz5A:
2.01
5inzD-4tz5A:
2.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wyq RISC-LOADING COMPLEX
SUBUNIT TARBP2

(Homo sapiens) 		PF16482
(Staufen_C) 		4 GLY B 339
CYH B 325
ARG B 354
GLY B 349
 None
 1.34A 5inzA-4wyqB:
undetectable
5inzC-4wyqB:
undetectable
5inzD-4wyqB:
undetectable		 5inzA-4wyqB:
13.64
5inzC-4wyqB:
13.64
5inzD-4wyqB:
13.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m10 CYCLOHEXANONE
MONOOXYGENASE FROM
THERMOCRISPUM
MUNICIPALE

(Thermocrispum
municipale) 		PF07992
(Pyr_redox_2) 		4 GLY A 276
CYH A 332
ARG A 280
GLY A 218
 None
 1.44A 5inzA-5m10A:
undetectable
5inzC-5m10A:
undetectable
5inzD-5m10A:
undetectable		 5inzA-5m10A:
2.74
5inzC-5m10A:
2.74
5inzD-5m10A:
2.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vnz TNF
RECEPTOR-ASSOCIATED
FACTOR 6

(Danio rerio) 		no annotation 4 GLY A  56
CYH A  74
ARG A  79
GLY A  77
 ZN  A 201 ( 4.7A)
ZN  A 201 (-2.3A)
None
None
 1.34A 5inzA-5vnzA:
undetectable
5inzC-5vnzA:
undetectable
5inzD-5vnzA:
undetectable		 5inzA-5vnzA:
undetectable
5inzC-5vnzA:
undetectable
5inzD-5vnzA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vo0 TNF
RECEPTOR-ASSOCIATED
FACTOR 6

(Danio rerio) 		no annotation 4 GLY A  56
CYH A  74
ARG A  79
GLY A  77
 ZN  A 301 ( 4.6A)
ZN  A 301 (-2.3A)
None
None
 1.27A 5inzA-5vo0A:
undetectable
5inzC-5vo0A:
undetectable
5inzD-5vo0A:
undetectable		 5inzA-5vo0A:
undetectable
5inzC-5vo0A:
undetectable
5inzD-5vo0A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xn6 OS07G0580900 PROTEIN

(Oryza sativa) 		PF00348
(polyprenyl_synt) 		4 GLY A 207
CYH A  57
ARG A 144
GLY A  62
 None
 1.16A 5inzA-5xn6A:
undetectable
5inzC-5xn6A:
undetectable
5inzD-5xn6A:
undetectable		 5inzA-5xn6A:
7.18
5inzC-5xn6A:
7.18
5inzD-5xn6A:
7.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zal RISC-LOADING COMPLEX
SUBUNIT TARBP2

(Homo sapiens) 		no annotation 4 GLY B 339
CYH B 325
ARG B 354
GLY B 349
 None
 1.48A 5inzA-5zalB:
undetectable
5inzC-5zalB:
undetectable
5inzD-5zalB:
undetectable		 5inzA-5zalB:
undetectable
5inzC-5zalB:
undetectable
5inzD-5zalB:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f0k FE-S-CLUSTER-CONTAIN
ING HYDROGENASE

(Rhodothermus
marinus) 		no annotation 4 GLY B 899
CYH B 897
ARG B 901
GLY B 941
 F3S  B1101 (-3.6A)
F3S  B1101 (-2.2A)
None
None
 1.41A 5inzA-6f0kB:
undetectable
5inzC-6f0kB:
undetectable
5inzD-6f0kB:
undetectable		 5inzA-6f0kB:
undetectable
5inzC-6f0kB:
undetectable
5inzD-6f0kB:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6req PROTEIN
(METHYLMALONYL-COA
MUTASE)

(Propionibacterium
freudenreichii) 		PF01642
(MM_CoA_mutase) 		4 GLY B 245
CYH B 445
ARG B 329
GLY B 247
 None
 1.20A 5inzA-6reqB:
undetectable
5inzC-6reqB:
undetectable
5inzD-6reqB:
undetectable		 5inzA-6reqB:
3.23
5inzC-6reqB:
3.23
5inzD-6reqB:
3.23