SIMILAR PATTERNS OF AMINO ACIDS FOR 5F8Y_B_X6XB203_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fob BETA-1,4-GALACTANASE

(Aspergillus
aculeatus) 		PF07745
(Glyco_hydro_53) 		5 TYR A 111
GLY A 164
GLY A 161
HIS A 159
ASP A 206
 None
 1.50A 5f8yB-1fobA:
0.0		 5f8yB-1fobA:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1oal SUPEROXIDE DISMUTASE

(Photobacterium
leiognathi) 		PF00080
(Sod_Cu) 		5 HIS A 125
GLY A 127
GLY A 141
VAL A 145
HIS A  45
 CU  A 153 (-3.2A)
None
None
None
CU  A 153 (-3.0A)
 1.32A 5f8yB-1oalA:
undetectable		 5f8yB-1oalA:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r66 TDP-GLUCOSE-4,6-DEHY
DRATASE

(Streptomyces
venezuelae) 		PF16363
(GDP_Man_Dehyd) 		5 TYR A 185
GLY A 183
HIS A  15
ASP A 221
HIS A 219
 None
 1.15A 5f8yB-1r66A:
0.0		 5f8yB-1r66A:
17.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2akz GAMMA ENOLASE

(Homo sapiens) 		PF00113
(Enolase_C)
PF03952
(Enolase_N) 		5 ASN A 150
HIS A 157
GLY A 154
GLY A 155
ASP A 208
 None
PO4  A 442 (-4.1A)
None
None
None
 1.44A 5f8yB-2akzA:
0.0		 5f8yB-2akzA:
15.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fqd BLUE COPPER OXIDASE
CUEO

(Escherichia
coli) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		5 HIS A 143
GLY A 113
GLY A 114
HIS A 141
HIS A 448
 C2O  A 602 (-3.5A)
None
None
C2O  A 602 (-3.2A)
C2O  A 602 (-3.3A)
 1.45A 5f8yB-2fqdA:
0.0		 5f8yB-2fqdA:
14.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2j89 METHIONINE SULFOXIDE
REDUCTASE A

(Populus
trichocarpa) 		PF01625
(PMSR) 		5 ASN A  88
TYR A 134
GLY A 132
VAL A  90
HIS A 113
 None
 1.11A 5f8yB-2j89A:
undetectable		 5f8yB-2j89A:
19.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jf7 STRICTOSIDINE-O-BETA
-D-GLUCOSIDASE

(Rauvolfia
serpentina) 		PF00232
(Glyco_hydro_1) 		5 TYR A 385
GLY A 386
GLY A 387
VAL A 420
HIS A 390
 None
 1.36A 5f8yB-2jf7A:
undetectable		 5f8yB-2jf7A:
14.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjg PUTATIVE ALDOLASE
MJ0400

(Methanocaldococcus
jannaschii) 		PF01791
(DeoC) 		5 HIS A  65
GLY A  89
GLY A  88
ASP A  33
HIS A  85
 None
None
None
F2P  A 501 (-3.5A)
None
 1.20A 5f8yB-2qjgA:
undetectable		 5f8yB-2qjgA:
20.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a52 COLD-ACTIVE ALKALINE
PHOSPHATASE

(Shewanella sp.
AP1) 		PF00245
(Alk_phosphatase) 		5 ASN A 271
HIS A 362
GLY A 273
GLY A 361
ASP A 227
 None
ZN  A1001 ( 3.3A)
None
None
ZN  A1001 ( 2.0A)
 1.48A 5f8yB-3a52A:
0.0		 5f8yB-3a52A:
16.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3b97 ALPHA-ENOLASE

(Homo sapiens) 		PF00113
(Enolase_C)
PF03952
(Enolase_N) 		5 ASN A 150
HIS A 157
GLY A 154
GLY A 155
ASP A 208
 None
SO4  A 436 (-4.1A)
None
None
None
 1.41A 5f8yB-3b97A:
undetectable		 5f8yB-3b97A:
15.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ecq ENDO-ALPHA-N-ACETYLG
ALACTOSAMINIDASE

(Streptococcus
pneumoniae) 		PF12905
(Glyco_hydro_101)
PF17451
(Glyco_hyd_101C) 		5 TYR A 652
GLY A 651
GLY A 656
HIS A 661
ASP A 658
 None
 1.40A 5f8yB-3ecqA:
undetectable		 5f8yB-3ecqA:
8.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ehm SUSD HOMOLOG

(Bacteroides
thetaiotaomicron) 		PF12741
(SusD-like) 		5 ASN A 177
GLY A 234
GLY A 235
VAL A 173
ASP A 230
 None
 1.36A 5f8yB-3ehmA:
undetectable		 5f8yB-3ehmA:
12.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ohg UNCHARACTERIZED
PROTEIN FROM DUF2233
FAMILY

(Bacteroides
ovatus) 		PF09992
(NAGPA) 		5 ASN A 307
GLY A 192
GLY A 193
VAL A 141
ASP A 270
 None
None
None
CL  A 400 (-4.3A)
EDO  A 414 ( 4.7A)
 1.20A 5f8yB-3ohgA:
undetectable		 5f8yB-3ohgA:
20.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p2m POSSIBLE HYDROLASE

(Mycobacterium
tuberculosis) 		PF12697
(Abhydrolase_6) 		5 ASN A 236
HIS A  88
TYR A 249
GLY A  91
GLY A  90
 None
 1.29A 5f8yB-3p2mA:
undetectable		 5f8yB-3p2mA:
17.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rrv ENOYL-COA
HYDRATASE/ISOMERASE

(Mycobacterium
avium) 		PF00378
(ECH_1) 		5 GLY A  67
GLY A  66
VAL A 140
HIS A 137
ASP A 135
 None
None
None
CA  A 257 (-3.3A)
None
 1.42A 5f8yB-3rrvA:
undetectable		 5f8yB-3rrvA:
17.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tmc UNCHARACTERIZED
PROTEIN

(Bdellovibrio
bacteriovorus) 		PF13487
(HD_5) 		5 HIS A 237
GLY A 179
VAL A 261
HIS A 183
ASP A 184
 FE  A 309 (-3.4A)
None
None
FE  A 310 (-3.4A)
FE  A 310 (-2.5A)
 1.43A 5f8yB-3tmcA:
undetectable		 5f8yB-3tmcA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wc3 ENDO-1,
4-BETA-GLUCANASE

(Eisenia fetida) 		PF00759
(Glyco_hydro_9) 		5 TYR A 134
GLY A  62
GLY A  65
VAL A 128
ASP A  67
 None
 1.42A 5f8yB-3wc3A:
undetectable		 5f8yB-3wc3A:
14.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3x1b LACCASE

(Lentinus) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		5 HIS A 132
GLY A  99
GLY A 100
HIS A 130
HIS A 422
 CU  A 616 (-3.2A)
None
None
CU  A 615 (-3.2A)
CU  A 616 ( 3.2A)
 1.49A 5f8yB-3x1bA:
undetectable		 5f8yB-3x1bA:
14.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bed HEMOCYANIN KLH1

(Megathura
crenulata) 		PF00264
(Tyrosinase)
PF14830
(Haemocyan_bet_s) 		5 TYR B2435
GLY B2414
GLY B2413
ASP B2443
HIS B2411
 None
 1.31A 5f8yB-4bedB:
undetectable		 5f8yB-4bedB:
6.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f1n KPAGO

(Vanderwaltozyma
polyspora) 		PF02171
(Piwi) 		5 HIS A 476
TYR A 478
GLY A 479
GLY A 480
VAL A1134
 None
 1.19A 5f8yB-4f1nA:
undetectable		 5f8yB-4f1nA:
9.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a55 ENDO-ALPHA-N-ACETYLG
ALACTOSAMINIDASE

(Streptococcus
pneumoniae) 		PF12905
(Glyco_hydro_101)
PF17451
(Glyco_hyd_101C) 		5 TYR A 652
GLY A 651
GLY A 656
HIS A 661
ASP A 658
 None
 1.46A 5f8yB-5a55A:
undetectable		 5f8yB-5a55A:
8.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 9 ASN A  27
HIS A  64
TYR A  66
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
 GOL  A 202 (-3.5A)
GOL  A 202 (-3.7A)
GOL  A 202 ( 4.9A)
GOL  A 202 (-3.7A)
GOL  A 202 (-2.9A)
None
GOL  A 202 (-3.5A)
GOL  A 202 (-3.1A)
GOL  A 202 (-3.8A)
 0.12A 5f8yB-5duyA:
33.9		 5f8yB-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 6 ASN A 119
HIS A  16
GLY A  20
VAL A  31
HIS A  33
ASP A  35
 GOL  A 201 (-3.2A)
GOL  A 201 (-3.8A)
GOL  A 201 (-3.1A)
None
GOL  A 201 (-3.5A)
GOL  A 201 (-3.6A)
 0.93A 5f8yB-5duyA:
33.9		 5f8yB-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 9 ASN A 119
HIS A  16
TYR A  18
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
 GOL  A 201 (-3.2A)
GOL  A 201 (-3.8A)
GOL  A 201 ( 4.5A)
GOL  A 201 (-3.3A)
GOL  A 201 (-3.1A)
None
GOL  A 201 (-3.5A)
GOL  A 201 (-3.6A)
GOL  A 201 (-4.1A)
 0.19A 5f8yB-5duyA:
33.9		 5f8yB-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 7 HIS A 108
GLY A 111
GLY A 112
VAL A 123
HIS A 125
ASP A 127
HIS A 129
 GOL  A 203 (-3.8A)
GOL  A 203 (-3.5A)
GOL  A 203 (-3.3A)
None
GOL  A 203 (-3.6A)
None
GOL  A 203 (-4.2A)
 0.31A 5f8yB-5duyA:
33.9		 5f8yB-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 5 HIS A 108
GLY A 112
VAL A 123
HIS A 125
ASP A 127
 GOL  A 203 (-3.8A)
GOL  A 203 (-3.3A)
None
GOL  A 203 (-3.6A)
None
 0.76A 5f8yB-5duyA:
33.9		 5f8yB-5duyA:
82.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f4z EPOXIDE HYDROLASE

(Streptomyces
carzinostaticus) 		PF06441
(EHN) 		5 ASN A  77
HIS A  79
GLY A 141
GLY A 138
VAL A  78
 None
 1.37A 5f8yB-5f4zA:
undetectable		 5f8yB-5f4zA:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5twb FERREDOXIN--NADP
REDUCTASE

(Staphylococcus
aureus) 		PF07992
(Pyr_redox_2) 		5 TYR A 178
GLY A 156
GLY A 157
VAL A 176
ASP A 162
 None
 1.22A 5f8yB-5twbA:
undetectable		 5f8yB-5twbA:
18.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uam ULVAN LYASE-PL25

(Pseudoalteromonas
sp. PLSV) 		PF15892
(BNR_4) 		5 HIS A 159
GLY A 145
GLY A 160
HIS A 143
ASP A 121
 None
None
None
EDO  A 509 ( 3.5A)
None
 1.29A 5f8yB-5uamA:
undetectable		 5f8yB-5uamA:
18.57
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A  16
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
 GOL  A 201 (-4.0A)
GOL  A 201 (-3.6A)
GOL  A 201 (-3.3A)
None
GOL  A 201 (-3.7A)
None
GOL  A 201 (-3.9A)
 0.37A 5f8yB-5vbkA:
33.0		 5f8yB-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 5 HIS A  16
GLY A  20
VAL A  31
HIS A  33
ASP A  35
 GOL  A 201 (-4.0A)
GOL  A 201 (-3.3A)
None
GOL  A 201 (-3.7A)
None
 0.73A 5f8yB-5vbkA:
33.0		 5f8yB-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A  64
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
 GOL  A 203 (-3.5A)
GOL  A 203 (-3.6A)
GOL  A 203 (-3.7A)
None
GOL  A 203 ( 4.0A)
GOL  A 203 (-3.8A)
GOL  A 203 (-4.1A)
 0.26A 5f8yB-5vbkA:
33.0		 5f8yB-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A 108
GLY A 111
GLY A 112
VAL A 123
HIS A 125
ASP A 127
HIS A 129
 GOL  A 202 (-3.9A)
GOL  A 202 (-3.1A)
GOL  A 202 (-3.3A)
None
GOL  A 202 (-3.8A)
None
GOL  A 202 (-4.1A)
 0.42A 5f8yB-5vbkA:
33.0		 5f8yB-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 5 HIS A 108
GLY A 112
VAL A 123
HIS A 125
ASP A 127
 GOL  A 202 (-3.9A)
GOL  A 202 (-3.3A)
None
GOL  A 202 (-3.8A)
None
 0.87A 5f8yB-5vbkA:
33.0		 5f8yB-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A  16
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
 A2G  A 201 (-3.7A)
A2G  A 201 (-3.3A)
A2G  A 201 (-3.1A)
None
A2G  A 201 (-3.7A)
A2G  A 201 (-3.5A)
A2G  A 201 (-4.0A)
 0.22A 5f8yB-5xg5A:
27.0		 5f8yB-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		5 HIS A  16
GLY A  20
VAL A  31
HIS A  33
ASP A  35
 A2G  A 201 (-3.7A)
A2G  A 201 (-3.1A)
None
A2G  A 201 (-3.7A)
A2G  A 201 (-3.5A)
 0.77A 5f8yB-5xg5A:
27.0		 5f8yB-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A  64
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
 A2G  A 202 (-3.7A)
A2G  A 202 (-3.3A)
A2G  A 202 (-3.3A)
None
A2G  A 202 (-3.9A)
A2G  A 202 (-3.6A)
A2G  A 202 (-4.0A)
 0.14A 5f8yB-5xg5A:
27.0		 5f8yB-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A 112
GLY A 115
GLY A 116
VAL A 127
HIS A 129
ASP A 131
HIS A 133
 A2G  A 203 (-3.7A)
A2G  A 203 (-3.2A)
A2G  A 203 (-3.2A)
None
A2G  A 203 (-3.8A)
A2G  A 203 (-3.6A)
A2G  A 203 (-4.0A)
 0.19A 5f8yB-5xg5A:
27.0		 5f8yB-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		5 HIS A 112
GLY A 116
VAL A 127
HIS A 129
ASP A 131
 A2G  A 203 (-3.7A)
A2G  A 203 (-3.2A)
None
A2G  A 203 (-3.8A)
A2G  A 203 (-3.6A)
 0.79A 5f8yB-5xg5A:
27.0		 5f8yB-5xg5A:
59.09