SIMILAR PATTERNS OF AMINO ACIDS FOR 5F8Y_A_X6XA203_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fob BETA-1,4-GALACTANASE

(Aspergillus
aculeatus) 		PF07745
(Glyco_hydro_53) 		5 TYR A 111
GLY A 164
GLY A 161
HIS A 159
ASP A 206
 None
 1.49A 5f8yA-1fobA:
0.0		 5f8yA-1fobA:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1oal SUPEROXIDE DISMUTASE

(Photobacterium
leiognathi) 		PF00080
(Sod_Cu) 		5 HIS A 125
GLY A 127
GLY A 141
VAL A 145
HIS A  45
 CU  A 153 (-3.2A)
None
None
None
CU  A 153 (-3.0A)
 1.39A 5f8yA-1oalA:
undetectable		 5f8yA-1oalA:
24.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r66 TDP-GLUCOSE-4,6-DEHY
DRATASE

(Streptomyces
venezuelae) 		PF16363
(GDP_Man_Dehyd) 		5 TYR A 185
GLY A 183
HIS A  15
ASP A 221
HIS A 219
 None
 1.21A 5f8yA-1r66A:
0.0		 5f8yA-1r66A:
17.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r8w GLYCEROL DEHYDRATASE

(Clostridium
butyricum) 		PF01228
(Gly_radical)
PF02901
(PFL-like) 		5 HIS A 281
GLY A 161
GLY A 280
ASP A 447
HIS A 164
 None
 1.49A 5f8yA-1r8wA:
0.0		 5f8yA-1r8wA:
10.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1t4k IMMUNOGLOBULIN IGG1,
HEAVY CHAIN

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 TYR B  97
GLY B  98
GLY B  99
HIS B  95
ASP B 101
 None
 1.04A 5f8yA-1t4kB:
0.0		 5f8yA-1t4kB:
20.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2akz GAMMA ENOLASE

(Homo sapiens) 		PF00113
(Enolase_C)
PF03952
(Enolase_N) 		5 HIS A 157
GLY A 154
GLY A 155
ASP A 208
ASN A 150
 PO4  A 442 (-4.1A)
None
None
None
None
 1.46A 5f8yA-2akzA:
0.0		 5f8yA-2akzA:
15.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jf7 STRICTOSIDINE-O-BETA
-D-GLUCOSIDASE

(Rauvolfia
serpentina) 		PF00232
(Glyco_hydro_1) 		5 TYR A 385
GLY A 386
GLY A 387
VAL A 420
HIS A 390
 None
 1.32A 5f8yA-2jf7A:
undetectable		 5f8yA-2jf7A:
14.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2lkd TRANSLATION
INITIATION FACTOR
IF-2

(Geobacillus
stearothermophilus) 		PF00009
(GTP_EFTU) 		5 HIS A  19
GLY A  20
VAL A  85
ASP A  90
ASN A 115
 None
GDP  A 179 (-3.0A)
None
None
GDP  A 179 (-3.6A)
 1.50A 5f8yA-2lkdA:
undetectable		 5f8yA-2lkdA:
22.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2q07 UNCHARACTERIZED
PROTEIN AF0587

(Archaeoglobus
fulgidus) 		PF01472
(PUA) 		5 TYR A 254
GLY A 340
GLY A 341
ASP A 259
ASN A 290
 None
 1.34A 5f8yA-2q07A:
undetectable		 5f8yA-2q07A:
20.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjg PUTATIVE ALDOLASE
MJ0400

(Methanocaldococcus
jannaschii) 		PF01791
(DeoC) 		5 HIS A  65
GLY A  89
GLY A  88
ASP A  33
HIS A  85
 None
None
None
F2P  A 501 (-3.5A)
None
 1.23A 5f8yA-2qjgA:
undetectable		 5f8yA-2qjgA:
20.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xr1 CLEAVAGE AND
POLYADENYLATION
SPECIFICITY FACTOR
100 KD SUBUNIT

(Methanosarcina
mazei) 		PF07521
(RMMBL)
PF07650
(KH_2)
PF10996
(Beta-Casp)
PF16661
(Lactamase_B_6)
PF17214
(KH_7) 		5 HIS A 242
TYR A 353
GLY A 351
HIS A 329
HIS A 247
 ZN  A1638 (-3.2A)
None
None
ZN  A1638 (-3.5A)
ZN  A1639 (-3.3A)
 1.46A 5f8yA-2xr1A:
undetectable		 5f8yA-2xr1A:
16.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3b97 ALPHA-ENOLASE

(Homo sapiens) 		PF00113
(Enolase_C)
PF03952
(Enolase_N) 		5 HIS A 157
GLY A 154
GLY A 155
ASP A 208
ASN A 150
 SO4  A 436 (-4.1A)
None
None
None
None
 1.43A 5f8yA-3b97A:
undetectable		 5f8yA-3b97A:
15.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ohg UNCHARACTERIZED
PROTEIN FROM DUF2233
FAMILY

(Bacteroides
ovatus) 		PF09992
(NAGPA) 		5 GLY A 192
GLY A 193
VAL A 141
ASP A 270
ASN A 307
 None
None
CL  A 400 (-4.3A)
EDO  A 414 ( 4.7A)
None
 1.22A 5f8yA-3ohgA:
undetectable		 5f8yA-3ohgA:
20.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p2m POSSIBLE HYDROLASE

(Mycobacterium
tuberculosis) 		PF12697
(Abhydrolase_6) 		5 HIS A  88
TYR A 249
GLY A  91
GLY A  90
ASN A 236
 None
 1.28A 5f8yA-3p2mA:
undetectable		 5f8yA-3p2mA:
17.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vtr N-ACETYLGLUCOSAMINID
ASE

(Ostrinia
furnacalis) 		PF00728
(Glyco_hydro_20)
PF14845
(Glycohydro_20b2) 		5 GLY A 366
GLY A 365
VAL A 369
HIS A 303
ASP A 249
 None
None
None
TCG  A 601 (-4.1A)
TCG  A 601 ( 4.9A)
 1.49A 5f8yA-3vtrA:
undetectable		 5f8yA-3vtrA:
12.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bed HEMOCYANIN KLH1

(Megathura
crenulata) 		PF00264
(Tyrosinase)
PF14830
(Haemocyan_bet_s) 		5 TYR B2435
GLY B2414
GLY B2413
ASP B2443
HIS B2411
 None
 1.35A 5f8yA-4bedB:
undetectable		 5f8yA-4bedB:
6.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f1n KPAGO

(Vanderwaltozyma
polyspora) 		PF02171
(Piwi) 		5 HIS A 476
TYR A 478
GLY A 479
GLY A 480
VAL A1134
 None
 1.14A 5f8yA-4f1nA:
undetectable		 5f8yA-4f1nA:
9.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4j3q CATECHOL OXIDASE

(Aspergillus
oryzae) 		PF00264
(Tyrosinase) 		5 HIS A 284
TYR A 249
GLY A 286
GLY A 287
HIS A 311
 CU  A1002 (-3.2A)
None
None
None
None
 1.48A 5f8yA-4j3qA:
undetectable		 5f8yA-4j3qA:
17.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jox 13.6 KDA
INSECTICIDAL CRYSTAL
PROTEIN

(Bacillus
thuringiensis) 		PF06355
(Aegerolysin) 		5 GLY A 101
GLY A 100
VAL A   6
HIS A 107
ASP A   9
 None
 1.41A 5f8yA-4joxA:
undetectable		 5f8yA-4joxA:
22.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 5 HIS A  16
GLY A  19
VAL A  31
HIS A  33
ASP A  35
 GOL  A 201 (-3.8A)
GOL  A 201 (-3.3A)
None
GOL  A 201 (-3.5A)
GOL  A 201 (-3.6A)
 0.83A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 9 HIS A  16
TYR A  18
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
ASN A 119
 GOL  A 201 (-3.8A)
GOL  A 201 ( 4.5A)
GOL  A 201 (-3.3A)
GOL  A 201 (-3.1A)
None
GOL  A 201 (-3.5A)
GOL  A 201 (-3.6A)
GOL  A 201 (-4.1A)
GOL  A 201 (-3.2A)
 0.16A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 5 HIS A  64
GLY A  67
VAL A  79
HIS A  81
ASP A  83
 GOL  A 202 (-3.7A)
GOL  A 202 (-3.7A)
None
GOL  A 202 (-3.5A)
GOL  A 202 (-3.1A)
 0.78A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 9 HIS A  64
TYR A  66
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
ASN A  27
 GOL  A 202 (-3.7A)
GOL  A 202 ( 4.9A)
GOL  A 202 (-3.7A)
GOL  A 202 (-2.9A)
None
GOL  A 202 (-3.5A)
GOL  A 202 (-3.1A)
GOL  A 202 (-3.8A)
GOL  A 202 (-3.5A)
 0.20A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 7 HIS A 108
GLY A 111
GLY A 112
VAL A 123
HIS A 125
ASP A 127
HIS A 129
 GOL  A 203 (-3.8A)
GOL  A 203 (-3.5A)
GOL  A 203 (-3.3A)
None
GOL  A 203 (-3.6A)
None
GOL  A 203 (-4.2A)
 0.21A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 5 HIS A 108
GLY A 112
VAL A 123
HIS A 125
ASP A 127
 GOL  A 203 (-3.8A)
GOL  A 203 (-3.3A)
None
GOL  A 203 (-3.6A)
None
 0.83A 5f8yA-5duyA:
34.0		 5f8yA-5duyA:
82.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f4z EPOXIDE HYDROLASE

(Streptomyces
carzinostaticus) 		PF06441
(EHN) 		5 HIS A  79
GLY A 141
GLY A 138
VAL A  78
ASN A  77
 None
 1.37A 5f8yA-5f4zA:
undetectable		 5f8yA-5f4zA:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i2g DIOL DEHYDRATASE

(Roseburia
inulinivorans) 		PF01228
(Gly_radical)
PF02901
(PFL-like) 		5 HIS A 283
GLY A 163
GLY A 282
ASP A 452
HIS A 166
 PGO  A 901 (-4.0A)
None
None
PGO  A 901 (-3.5A)
PGO  A 901 (-4.0A)
 1.44A 5f8yA-5i2gA:
undetectable		 5f8yA-5i2gA:
10.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5o30 PUTATIVE
OXIDOREDUCTASE

(Ilumatobacter
coccineus) 		PF13561
(adh_short_C2) 		5 TYR A 165
GLY A 166
GLY A 167
VAL A 120
ASN A 124
 None
 1.23A 5f8yA-5o30A:
undetectable		 5f8yA-5o30A:
19.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5or4 CATECHOL OXIDASE

(Aspergillus
oryzae) 		no annotation 5 HIS A 284
TYR A 249
GLY A 286
GLY A 287
HIS A 311
 CU  A2002 (-3.2A)
None
None
None
None
 1.45A 5f8yA-5or4A:
undetectable		 5f8yA-5or4A:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5twb FERREDOXIN--NADP
REDUCTASE

(Staphylococcus
aureus) 		PF07992
(Pyr_redox_2) 		5 TYR A 178
GLY A 156
GLY A 157
VAL A 176
ASP A 162
 None
 1.15A 5f8yA-5twbA:
undetectable		 5f8yA-5twbA:
18.26
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A  16
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
 GOL  A 201 (-4.0A)
GOL  A 201 (-3.6A)
GOL  A 201 (-3.3A)
None
GOL  A 201 (-3.7A)
None
GOL  A 201 (-3.9A)
 0.26A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 5 HIS A  16
GLY A  20
VAL A  31
HIS A  33
ASP A  35
 GOL  A 201 (-4.0A)
GOL  A 201 (-3.3A)
None
GOL  A 201 (-3.7A)
None
 0.78A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A  64
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
 GOL  A 203 (-3.5A)
GOL  A 203 (-3.6A)
GOL  A 203 (-3.7A)
None
GOL  A 203 ( 4.0A)
GOL  A 203 (-3.8A)
GOL  A 203 (-4.1A)
 0.32A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 5 HIS A  64
GLY A  67
VAL A  79
HIS A  81
ASP A  83
 GOL  A 203 (-3.5A)
GOL  A 203 (-3.6A)
None
GOL  A 203 ( 4.0A)
GOL  A 203 (-3.8A)
 0.81A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 7 HIS A 108
GLY A 111
GLY A 112
VAL A 123
HIS A 125
ASP A 127
HIS A 129
 GOL  A 202 (-3.9A)
GOL  A 202 (-3.1A)
GOL  A 202 (-3.3A)
None
GOL  A 202 (-3.8A)
None
GOL  A 202 (-4.1A)
 0.37A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vbk LECTIN

(Mytilus
californianus) 		no annotation 5 HIS A 108
GLY A 112
VAL A 123
HIS A 125
ASP A 127
 GOL  A 202 (-3.9A)
GOL  A 202 (-3.3A)
None
GOL  A 202 (-3.8A)
None
 0.91A 5f8yA-5vbkA:
33.3		 5f8yA-5vbkA:
88.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A  16
GLY A  19
GLY A  20
VAL A  31
HIS A  33
ASP A  35
HIS A  37
 A2G  A 201 (-3.7A)
A2G  A 201 (-3.3A)
A2G  A 201 (-3.1A)
None
A2G  A 201 (-3.7A)
A2G  A 201 (-3.5A)
A2G  A 201 (-4.0A)
 0.15A 5f8yA-5xg5A:
27.0		 5f8yA-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A  64
GLY A  67
GLY A  68
VAL A  79
HIS A  81
ASP A  83
HIS A  85
 A2G  A 202 (-3.7A)
A2G  A 202 (-3.3A)
A2G  A 202 (-3.3A)
None
A2G  A 202 (-3.9A)
A2G  A 202 (-3.6A)
A2G  A 202 (-4.0A)
 0.12A 5f8yA-5xg5A:
27.0		 5f8yA-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		7 HIS A 112
GLY A 115
GLY A 116
VAL A 127
HIS A 129
ASP A 131
HIS A 133
 A2G  A 203 (-3.7A)
A2G  A 203 (-3.2A)
A2G  A 203 (-3.2A)
None
A2G  A 203 (-3.8A)
A2G  A 203 (-3.6A)
A2G  A 203 (-4.0A)
 0.12A 5f8yA-5xg5A:
27.0		 5f8yA-5xg5A:
59.09
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xg5 MITSUBA-1

(synthetic
construct) 		PF14200
(RicinB_lectin_2) 		5 HIS A 112
GLY A 115
VAL A 127
HIS A 129
ASP A 131
 A2G  A 203 (-3.7A)
A2G  A 203 (-3.2A)
None
A2G  A 203 (-3.8A)
A2G  A 203 (-3.6A)
 0.86A 5f8yA-5xg5A:
27.0		 5f8yA-5xg5A:
59.09