SIMILAR PATTERNS OF AMINO ACIDS FOR 5DZ2_A_212A404_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yyr TRICHODIENE SYNTHASE

(Fusarium
sporotrichioides) 		PF06330
(TRI5) 		5 ARG A 182
ASN A 225
SER A 229
GLU A 233
ARG A 304
 SAZ  A 709 ( 3.8A)
SAZ  A 709 (-3.3A)
None
None
SAZ  A 709 ( 4.5A)
 0.99A 5dz2A-1yyrA:
19.9		 5dz2A-1yyrA:
21.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lg5 EPI-ISOZIZAENE
SYNTHASE

(Streptomyces
coelicolor) 		no annotation 7 ASP A  99
ARG A 194
ASN A 240
SER A 244
GLU A 248
ARG A 338
TYR A 339
 MG  A 701 (-2.5A)
POP  A 703 (-2.8A)
MG  A 702 (-2.6A)
MG  A 702 ( 2.3A)
MG  A 702 ( 2.6A)
POP  A 703 (-4.0A)
POP  A 703 ( 4.4A)
 0.72A 5dz2A-3lg5A:
36.0		 5dz2A-3lg5A:
24.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v1v 2-METHYLISOBORNEOL
SYNTHASE

(Streptomyces
coelicolor) 		no annotation 6 ARG A 300
ASN A 345
SER A 349
GLU A 353
ARG A 433
TYR A 434
 GST  A 511 (-3.4A)
MG  A 501 ( 2.7A)
MG  A 501 ( 2.3A)
MG  A 501 ( 2.6A)
GST  A 511 (-3.9A)
GST  A 511 (-4.6A)
 0.65A 5dz2A-3v1vA:
32.1		 5dz2A-3v1vA:
22.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v1v 2-METHYLISOBORNEOL
SYNTHASE

(Streptomyces
coelicolor) 		no annotation 5 ASP A 197
ARG A 300
ASN A 345
SER A 349
GLU A 353
 MG  A 502 ( 3.7A)
GST  A 511 (-3.4A)
MG  A 501 ( 2.7A)
MG  A 501 ( 2.3A)
MG  A 501 ( 2.6A)
 0.93A 5dz2A-3v1vA:
32.1		 5dz2A-3v1vA:
22.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4okm TERPENE SYNTHASE
METAL-BINDING
DOMAIN-CONTAINING
PROTEIN

(Streptomyces
pristinaespiralis) 		no annotation 7 ASP A  82
ARG A 178
ASN A 224
SER A 228
GLU A 232
ARG A 310
TYR A 311
 MG  A 902 ( 2.5A)
PPV  A 904 (-2.9A)
MG  A 903 ( 2.7A)
MG  A 903 ( 2.3A)
MG  A 903 ( 2.7A)
PPV  A 904 (-3.9A)
PPV  A 904 (-4.4A)
 0.95A 5dz2A-4okmA:
36.3		 5dz2A-4okmA:
25.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zq8 ISOPRENOID SYNTHASE

(Streptomyces
lydicus) 		no annotation 6 ARG A 214
ASN A 259
SER A 263
ARG A 266
GLU A 267
TYR A 346
 None
 0.68A 5dz2A-4zq8A:
31.6		 5dz2A-4zq8A:
26.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zq8 ISOPRENOID SYNTHASE

(Streptomyces
lydicus) 		no annotation 6 ARG A 214
ASN A 259
SER A 263
GLU A 267
ARG A 345
TYR A 346
 None
 1.06A 5dz2A-4zq8A:
31.6		 5dz2A-4zq8A:
26.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a0k LABDANE-RELATED
DITERPENE SYNTHASE

(Streptomyces
sp.) 		no annotation 5 ARG A 184
ASN A 230
SER A 234
ARG A 237
ARG A 316
 MG  A1323 (-4.0A)
MG  A1323 (-3.5A)
MG  A1323 (-3.4A)
None
None
 0.93A 5dz2A-5a0kA:
33.3		 5dz2A-5a0kA:
29.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a0k LABDANE-RELATED
DITERPENE SYNTHASE

(Streptomyces
sp.) 		no annotation 5 ASN A 230
SER A 234
ARG A 237
ARG A 316
TYR A 317
 MG  A1323 (-3.5A)
MG  A1323 (-3.4A)
None
None
None
 0.73A 5dz2A-5a0kA:
33.3		 5dz2A-5a0kA:
29.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5erm FUSICOCCADIENE
SYNTHASE

(Diaporthe
amygdali) 		no annotation 6 ASP A  92
ARG A 188
ASN A 232
SER A 236
GLU A 240
ARG A 325
 MG  A 404 (-2.3A)
210  A 401 ( 2.3A)
210  A 401 ( 2.5A)
MG  A 405 ( 2.3A)
MG  A 405 (-2.5A)
210  A 401 (-3.1A)
 0.71A 5dz2A-5ermA:
23.1		 5dz2A-5ermA:
21.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5erm FUSICOCCADIENE
SYNTHASE

(Diaporthe
amygdali) 		no annotation 6 ASP A  92
ASN A 232
SER A 236
GLU A 240
ARG A 325
TYR A 326
 MG  A 404 (-2.3A)
210  A 401 ( 2.5A)
MG  A 405 ( 2.3A)
MG  A 405 (-2.5A)
210  A 401 (-3.1A)
210  A 401 (-4.5A)
 0.52A 5dz2A-5ermA:
23.1		 5dz2A-5ermA:
21.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5in8 ARISTOLOCHENE
SYNTHASE

(Aspergillus
terreus) 		no annotation 6 ARG A 169
ASN A 213
SER A 217
GLU A 221
ARG A 308
TYR A 309
 MG  A 403 ( 4.2A)
MG  A 403 ( 2.8A)
MG  A 403 ( 2.4A)
MG  A 403 ( 2.8A)
PO4  A 404 (-3.9A)
PO4  A 404 (-4.4A)
 0.74A 5dz2A-5in8A:
32.2		 5dz2A-5in8A:
23.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nx7 PENTALENENE SYNTHASE

(Streptomyces
clavuligerus) 		no annotation 7 ASP A  81
ARG A 174
ASN A 220
SER A 224
GLU A 228
ARG A 314
TYR A 315
 MG  A 404 (-2.6A)
0FV  A 400 ( 3.0A)
0FV  A 400 (-2.7A)
MG  A 402 (-2.2A)
MG  A 402 (-2.6A)
LA6  A 401 ( 3.8A)
0FV  A 400 ( 4.4A)
 0.69A 5dz2A-5nx7A:
38.8		 5dz2A-5nx7A:
27.97