SIMILAR PATTERNS OF AMINO ACIDS FOR 5DBY_A_NPSA602_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ee0 2-PYRONE SYNTHASE

(Gerbera hybrid
cultivar) 		PF00195
(Chal_sti_synt_N)
PF02797
(Chal_sti_synt_C) 		5 LEU A 322
LYS A 328
SER A 293
LEU A 292
SER A 302
 None
 1.30A 5dbyA-1ee0A:
undetectable		 5dbyA-1ee0A:
21.60
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		7 LEU A 387
ASN A 391
PHE A 403
LEU A 407
ARG A 410
LYS A 414
LEU A 453
 None
 0.85A 5dbyA-1tf0A:
46.9		 5dbyA-1tf0A:
76.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		8 LEU A 387
ASN A 391
PHE A 403
LEU A 407
TYR A 411
LYS A 414
LEU A 453
SER A 489
 None
 0.67A 5dbyA-1tf0A:
46.9		 5dbyA-1tf0A:
76.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1u6g TIP120 PROTEIN

(Homo sapiens) 		PF08623
(TIP120) 		5 LEU C1093
PHE C1030
LEU C1052
TYR C1053
LEU C1100
 None
 1.08A 5dbyA-1u6gC:
2.4		 5dbyA-1u6gC:
20.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1ysx SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		6 LEU A 387
ASN A 391
CYH A 392
PHE A 403
LEU A 407
TYR A 411
 None
4EB  A1000 (-3.5A)
4EB  A1000 (-3.2A)
4EB  A1000 ( 4.1A)
4EB  A1000 (-4.5A)
4EB  A1000 (-3.3A)
 1.11A 5dbyA-1ysxA:
3.8		 5dbyA-1ysxA:
39.37
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1ysx SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		5 LEU A 387
CYH A 392
PHE A 403
LEU A 407
LYS A 414
 None
4EB  A1000 (-3.2A)
4EB  A1000 ( 4.1A)
4EB  A1000 (-4.5A)
4EB  A1000 (-3.9A)
 1.12A 5dbyA-1ysxA:
3.8		 5dbyA-1ysxA:
39.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gdn R-OXYNITRILE LYASE
ISOENZYME 1

(Prunus dulcis) 		PF00732
(GMC_oxred_N)
PF05199
(GMC_oxred_C) 		5 LEU A 465
PHE A 474
LEU A 505
TYR A 502
SER A 125
 None
None
None
FAD  A 522 (-4.5A)
MXN  A 531 (-4.1A)
 1.44A 5dbyA-3gdnA:
0.5		 5dbyA-3gdnA:
20.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k7y ASPARTATE
AMINOTRANSFERASE

(Plasmodium
falciparum) 		PF00155
(Aminotran_1_2) 		5 LEU A 368
PHE A 328
LEU A 332
LEU A 361
SER A 401
 None
 1.23A 5dbyA-3k7yA:
undetectable		 5dbyA-3k7yA:
21.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3red HYDROXYNITRILE LYASE

(Prunus mume) 		PF00732
(GMC_oxred_N)
PF05199
(GMC_oxred_C) 		5 LEU A 466
PHE A 475
LEU A 506
TYR A 503
SER A 125
 None
None
None
FAD  A 773 (-4.2A)
None
 1.50A 5dbyA-3redA:
undetectable		 5dbyA-3redA:
21.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rg2 ENTEROBACTIN
SYNTHASE COMPONENT E
(ENTE),
2,3-DIHYDRO-2,3-DIHY
DROXYBENZOATE
SYNTHETASE,
ISOCHROISMATASE
(ENTB)

(Escherichia
coli) 		PF00501
(AMP-binding)
PF00550
(PP-binding)
PF13193
(AMP-binding_C) 		5 LEU A 102
TYR A 186
CYH A 228
SER A 243
LEU A 244
 None
 1.47A 5dbyA-3rg2A:
undetectable		 5dbyA-3rg2A:
22.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3t50 BLUE-LIGHT-ACTIVATED
HISTIDINE KINASE

(Brucella
melitensis) 		PF13426
(PAS_9) 		5 LEU A 113
ASN A 111
PHE A 109
LEU A  56
SER A 130
 FMN  A 200 (-4.3A)
FMN  A 200 (-3.8A)
None
None
FMN  A 200 (-3.4A)
 1.45A 5dbyA-3t50A:
undetectable		 5dbyA-3t50A:
11.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tyt HETEROGENEOUS
NUCLEAR
RIBONUCLEOPROTEIN L

(Mus musculus) 		PF13893
(RRM_5) 		5 LEU A 575
ASN A 560
LEU A 402
ARG A 481
LEU A 500
 None
 1.42A 5dbyA-3tytA:
undetectable		 5dbyA-3tytA:
18.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wwe OXIDIZED POLYVINYL
ALCOHOL HYDROLASE

(Pseudomonas sp.
VM15C) 		no annotation 5 LEU A 254
LEU A 347
ARG A 271
TYR A 348
SER A 196
 None
 1.31A 5dbyA-3wweA:
undetectable		 5dbyA-3wweA:
19.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pju COHESIN SUBUNIT SA-2

(Homo sapiens) 		PF08514
(STAG) 		5 ASN A 499
PHE A 567
LEU A 574
TYR A 578
LEU A 521
 None
 1.21A 5dbyA-4pjuA:
undetectable		 5dbyA-4pjuA:
21.13
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4po0 SERUM ALBUMIN

(Oryctolagus
cuniculus) 		PF00273
(Serum_albumin) 		8 LEU A 387
ASN A 391
PHE A 403
LEU A 407
ARG A 410
TYR A 411
LEU A 453
SER A 489
 NPS  A 601 ( 4.7A)
NPS  A 601 (-4.3A)
None
NPS  A 601 ( 4.9A)
NPS  A 601 (-4.5A)
NPS  A 601 (-4.3A)
NPS  A 601 (-4.7A)
NPS  A 601 (-3.1A)
 0.54A 5dbyA-4po0A:
50.3		 5dbyA-4po0A:
71.06
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4po0 SERUM ALBUMIN

(Oryctolagus
cuniculus) 		PF00273
(Serum_albumin) 		8 LEU A 387
ASN A 391
PHE A 403
LEU A 407
TYR A 411
LYS A 414
LEU A 453
SER A 489
 NPS  A 601 ( 4.7A)
NPS  A 601 (-4.3A)
None
NPS  A 601 ( 4.9A)
NPS  A 601 (-4.3A)
NPS  A 601 (-2.7A)
NPS  A 601 (-4.7A)
NPS  A 601 (-3.1A)
 0.65A 5dbyA-4po0A:
50.3		 5dbyA-4po0A:
71.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r33 NOSL

(Streptomyces
actuosus) 		PF06968
(BATS) 		5 CYH A 200
PHE A 234
LEU A 271
SER A 281
LEU A 280
 None
None
None
TRP  A 503 ( 4.9A)
None
 1.32A 5dbyA-4r33A:
undetectable		 5dbyA-4r33A:
22.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aw4 NA, K-ATPASE ALPHA
SUBUNIT

(Squalus
acanthias) 		PF00122
(E1-E2_ATPase)
PF00689
(Cation_ATPase_C)
PF00690
(Cation_ATPase_N)
PF13246
(Cation_ATPase) 		5 LEU A 456
PHE A 411
CYH A 463
SER A 422
LEU A 421
 None
 1.35A 5dbyA-5aw4A:
undetectable		 5dbyA-5aw4A:
19.01
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5dqf SERUM ALBUMIN

(Equus caballus) 		PF00273
(Serum_albumin) 		10 LEU A 386
ASN A 390
PHE A 402
LEU A 406
ARG A 409
TYR A 410
LYS A 413
SER A 448
LEU A 452
SER A 488
 None
 0.47A 5dbyA-5dqfA:
54.7		 5dbyA-5dqfA:
99.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ewu MAGNESIUM-CHELATASE
SUBUNIT CHLH,
CHLOROPLASTIC

(Arabidopsis
thaliana) 		PF02514
(CobN-Mg_chel) 		5 LEU A1030
ASN A1085
PHE A1197
LEU A1201
SER A1227
 None
 1.47A 5dbyA-5ewuA:
1.8		 5dbyA-5ewuA:
20.54
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ghk SERUM ALBUMIN

(Canis lupus) 		PF00273
(Serum_albumin) 		8 ASN A 391
PHE A 403
LEU A 407
ARG A 410
TYR A 411
LYS A 414
LEU A 453
SER A 489
 None
 0.59A 5dbyA-5ghkA:
47.6		 5dbyA-5ghkA:
76.20
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ghk SERUM ALBUMIN

(Canis lupus) 		PF00273
(Serum_albumin) 		8 LEU A 387
ASN A 391
PHE A 403
LEU A 407
ARG A 410
TYR A 411
LYS A 414
SER A 489
 None
 0.74A 5dbyA-5ghkA:
47.6		 5dbyA-5ghkA:
76.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kf7 BIFUNCTIONAL PROTEIN
PUTA

(Sinorhizobium
meliloti) 		PF00171
(Aldedh)
PF01619
(Pro_dh)
PF14850
(Pro_dh-DNA_bdg) 		5 LEU A 978
LEU A 956
ARG A 953
TYR A 951
LEU A 974
 None
 1.01A 5dbyA-5kf7A:
undetectable		 5dbyA-5kf7A:
19.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l0q MAB 8C7 HEAVY CHAIN

(Homo sapiens) 		PF07654
(C1-set)
PF07686
(V-set) 		5 LEU C  20
TYR C  94
SER C  16
LEU C  86
SER C  91
 None
None
SO4  C 303 (-4.3A)
None
None
 1.20A 5dbyA-5l0qC:
undetectable		 5dbyA-5l0qC:
17.45
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ori ALBUMIN

(Capra hircus) 		no annotation 8 ASN A 390
PHE A 402
LEU A 406
ARG A 409
TYR A 410
LYS A 413
LEU A 452
SER A 488
 None
 0.51A 5dbyA-5oriA:
51.3		 5dbyA-5oriA:
75.30
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ori ALBUMIN

(Capra hircus) 		no annotation 6 LEU A 386
ASN A 390
TYR A 410
LYS A 413
LEU A 452
SER A 488
 None
 0.83A 5dbyA-5oriA:
51.3		 5dbyA-5oriA:
75.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5woe -

(-) 		no annotation 5 LEU A 715
PHE A 782
LEU A 764
LEU A 737
SER A 756
 None
 1.29A 5dbyA-5woeA:
undetectable		 5dbyA-5woeA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wx4 ALKYLQUINOLONE
SYNTHASE

(Tetradium
ruticarpum) 		PF00195
(Chal_sti_synt_N)
PF02797
(Chal_sti_synt_C) 		5 LEU A 323
TYR A 306
LYS A 329
SER A 294
SER A 303
 None
 1.29A 5dbyA-5wx4A:
undetectable		 5dbyA-5wx4A:
21.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yxe SERUM ALBUMIN

(Felis catus) 		no annotation 7 ASN A 391
PHE A 403
LEU A 407
ARG A 410
TYR A 411
LYS A 414
LEU A 453
 None
 0.82A 5dbyA-5yxeA:
46.0		 5dbyA-5yxeA:
14.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yxe SERUM ALBUMIN

(Felis catus) 		no annotation 8 LEU A 387
ASN A 391
PHE A 403
LEU A 407
TYR A 411
LYS A 414
LEU A 453
SER A 489
 None
 0.63A 5dbyA-5yxeA:
46.0		 5dbyA-5yxeA:
14.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yxe SERUM ALBUMIN

(Felis catus) 		no annotation 5 LEU A 387
LEU A 430
TYR A 411
LYS A 414
SER A 489
 None
 1.34A 5dbyA-5yxeA:
46.0		 5dbyA-5yxeA:
14.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6d1w POLYCYSTIN-2

(Homo sapiens) 		no annotation 5 LEU A 256
LEU A 441
CYH A 437
LEU A 291
SER A 286
 None
 1.15A 5dbyA-6d1wA:
2.8		 5dbyA-6d1wA:
9.52