SIMILAR PATTERNS OF AMINO ACIDS FOR 5DBY_A_DIFA601_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ebd DIHYDROLIPOAMIDE
DEHYDROGENASE

(Geobacillus
stearothermophilus) 		PF02852
(Pyr_redox_dim)
PF07992
(Pyr_redox_2) 		5 LEU A 281
ALA A 119
VAL A 129
GLU A  39
LYS A  40
 None
FAD  A 462 (-4.0A)
None
FAD  A 462 (-2.5A)
FAD  A 462 (-4.1A)
 1.39A 5dbyA-1ebdA:
undetectable		 5dbyA-1ebdA:
22.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gv0 MALATE DEHYDROGENASE

(Chlorobaculum
tepidum) 		PF00056
(Ldh_1_N)
PF02866
(Ldh_1_C) 		5 LEU A 305
ASN A  94
ALA A  95
VAL A  98
ARG A  99
 None
NAD  A1306 (-4.1A)
None
None
None
 1.00A 5dbyA-1gv0A:
undetectable		 5dbyA-1gv0A:
19.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		5 LEU A 394
ALA A 406
VAL A 409
ARG A 410
LYS A 545
 None
 1.47A 5dbyA-1tf0A:
46.9		 5dbyA-1tf0A:
76.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1tf0 SERUM ALBUMIN

(Homo sapiens) 		PF00273
(Serum_albumin) 		5 LEU A 394
ASN A 405
ALA A 406
VAL A 409
ARG A 410
 None
 0.73A 5dbyA-1tf0A:
46.9		 5dbyA-1tf0A:
76.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1uyv ACETYL-COA
CARBOXYLASE

(Saccharomyces
cerevisiae) 		PF01039
(Carboxyl_trans) 		5 LEU A1739
ASN A1605
VAL A1607
ARG A1618
GLU A1600
 None
 1.11A 5dbyA-1uyvA:
0.0		 5dbyA-1uyvA:
21.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vpl ABC TRANSPORTER,
ATP-BINDING PROTEIN

(Thermotoga
maritima) 		PF00005
(ABC_tran) 		5 ASN A 169
ALA A 170
VAL A 173
ARG A 174
GLU A  84
 None
 0.86A 5dbyA-1vplA:
undetectable		 5dbyA-1vplA:
19.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ix8 ELONGATION FACTOR 3A

(Saccharomyces
cerevisiae) 		PF00005
(ABC_tran) 		5 ASP A1201
ALA A1236
VAL A1235
LYS A1447
GLU A1434
 None
 1.33A 5dbyA-2ix8A:
3.4		 5dbyA-2ix8A:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pl2 HYPOTHETICAL
CONSERVED PROTEIN
TTC0263

(Thermus
thermophilus) 		PF13429
(TPR_15)
PF14559
(TPR_19) 		5 LEU A 110
ALA A 106
VAL A 102
GLU A  84
LYS A  87
 None
 1.16A 5dbyA-2pl2A:
1.5		 5dbyA-2pl2A:
18.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2k TRNA(ILE)-LYSIDINE
SYNTHASE

(Geobacillus
kaustophilus) 		PF01171
(ATP_bind_3)
PF09179
(TilS)
PF11734
(TilS_C) 		5 ASP A 241
ALA A 239
VAL A 272
ARG A 271
LYS A 245
 None
 1.45A 5dbyA-3a2kA:
0.0		 5dbyA-3a2kA:
22.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ddm PUTATIVE MANDELATE
RACEMASE/MUCONATE
LACTONIZING ENZYME

(Bordetella
bronchiseptica) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		5 LEU A 222
ASP A 185
ASN A 188
ALA A 189
VAL A 192
 None
 0.74A 5dbyA-3ddmA:
1.1		 5dbyA-3ddmA:
20.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ge4 DNA PROTECTION
DURING STARVATION
PROTEIN

(Brucella
melitensis) 		PF00210
(Ferritin) 		5 LEU A 155
ALA A 122
VAL A 125
ARG A 126
GLU A  65
 None
 1.48A 5dbyA-3ge4A:
1.2		 5dbyA-3ge4A:
15.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3i0p MALATE DEHYDROGENASE

(Entamoeba
histolytica) 		PF02615
(Ldh_2) 		5 ASP A  28
ASN A  31
ALA A  32
VAL A  35
ARG A  36
 None
 1.37A 5dbyA-3i0pA:
0.9		 5dbyA-3i0pA:
21.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p3v PTS SYSTEM,
N-ACETYLGALACTOSAMIN
E-SPECIFIC IIB
COMPONENT

(Streptococcus
pyogenes) 		PF03830
(PTSIIB_sorb) 		5 LEU A  93
ASP A  89
ASN A  36
ALA A  35
VAL A  34
 None
None
PEG  A 202 ( 4.1A)
None
None
 1.25A 5dbyA-3p3vA:
undetectable		 5dbyA-3p3vA:
13.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4c3o HYDROGENASE-1 LARGE
SUBUNIT
HYDROGENASE-1 SMALL
SUBUNIT

(Salmonella
enterica) 		PF00374
(NiFeSe_Hases)
PF01058
(Oxidored_q6)
PF14720
(NiFe_hyd_SSU_C) 		5 LEU B 250
ASP A  67
ALA A  70
VAL A  72
ARG A  74
 F3S  B1002 (-4.0A)
None
None
None
None
 1.28A 5dbyA-4c3oB:
undetectable		 5dbyA-4c3oB:
17.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4po0 SERUM ALBUMIN

(Oryctolagus
cuniculus) 		PF00273
(Serum_albumin) 		5 LEU A 394
ASN A 405
ALA A 406
VAL A 409
ARG A 410
 None
NPS  A 603 (-4.5A)
NPS  A 603 ( 4.0A)
None
NPS  A 601 (-4.5A)
 0.37A 5dbyA-4po0A:
50.3		 5dbyA-4po0A:
71.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rz2 SITE-DETERMINING
PROTEIN

(Geobacillus
thermodenitrificans) 		PF10609
(ParA) 		5 ASP A 219
ALA A 221
VAL A 190
GLU A 206
LYS A 209
 None
 1.45A 5dbyA-4rz2A:
undetectable		 5dbyA-4rz2A:
19.90
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5dqf SERUM ALBUMIN

(Equus caballus) 		PF00273
(Serum_albumin) 		6 LEU A 393
ASN A 404
ALA A 405
VAL A 408
ARG A 409
LYS A 540
 None
None
None
None
None
SO4  A 609 (-4.0A)
 0.47A 5dbyA-5dqfA:
54.7		 5dbyA-5dqfA:
99.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5dqf SERUM ALBUMIN

(Equus caballus) 		PF00273
(Serum_albumin) 		6 LEU A 393
ASP A 401
ASN A 404
ALA A 405
VAL A 408
ARG A 409
 None
CL  A 615 ( 3.8A)
None
None
None
None
 0.20A 5dbyA-5dqfA:
54.7		 5dbyA-5dqfA:
99.48
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ghk SERUM ALBUMIN

(Canis lupus) 		PF00273
(Serum_albumin) 		5 LEU A 394
ASN A 405
ALA A 406
VAL A 409
ARG A 410
 None
 0.30A 5dbyA-5ghkA:
47.6		 5dbyA-5ghkA:
76.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jp0 BETA-GLUCOSIDASE
BOGH3B

(Bacteroides
ovatus) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 ASP A 373
ALA A 377
VAL A 379
ARG A 381
LYS A  51
 None
 1.35A 5dbyA-5jp0A:
undetectable		 5dbyA-5jp0A:
21.83
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ori ALBUMIN

(Capra hircus) 		no annotation 5 LEU A 393
ASN A 404
ALA A 405
VAL A 408
ARG A 409
 None
 0.50A 5dbyA-5oriA:
51.3		 5dbyA-5oriA:
75.30