SIMILAR PATTERNS OF AMINO ACIDS FOR 5B8I_C_FK5C201_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1e0t PYRUVATE KINASE

(Escherichia
coli) 		PF00224
(PK)
PF02887
(PK_C) 		4 LEU A  24
MET A  54
VAL A  53
ASN A  52
 None
 1.42A 5b8iB-1e0tA:
undetectable		 5b8iB-1e0tA:
16.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1o5h FORMIMINOTETRAHYDROF
OLATE CYCLODEAMINASE

(Thermotoga
maritima) 		PF04961
(FTCD_C) 		4 LEU A  38
MET A  41
VAL A  42
ASN A 131
 None
 1.39A 5b8iB-1o5hA:
undetectable		 5b8iB-1o5hA:
22.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1p99 HYPOTHETICAL PROTEIN
PG110

(Staphylococcus
aureus) 		PF03180
(Lipoprotein_9) 		4 LEU A 113
MET A  89
VAL A 242
ASN A 243
 None
 0.92A 5b8iB-1p99A:
0.0		 5b8iB-1p99A:
20.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pch PHOSPHOCARRIER
PROTEIN

(Mycoplasma
capricolum) 		PF00381
(PTS-HPr) 		4 LEU A  14
MET A  51
VAL A  50
ASN A  49
 None
 1.38A 5b8iB-1pchA:
undetectable		 5b8iB-1pchA:
19.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1q5r PROTEASOME BETA-TYPE
SUBUNIT 1

(Rhodococcus
erythropolis) 		PF00227
(Proteasome) 		4 LEU H  83
MET H  86
VAL H  87
ASN H  90
 None
 1.34A 5b8iB-1q5rH:
0.3		 5b8iB-1q5rH:
19.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z6r MLC PROTEIN

(Escherichia
coli) 		PF00480
(ROK) 		4 LEU A 326
MET A 329
VAL A 330
ASN A 334
 None
 1.31A 5b8iB-1z6rA:
0.0		 5b8iB-1z6rA:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ab4 TRNA PSEUDOURIDINE
SYNTHASE B

(Thermotoga
maritima) 		PF01472
(PUA)
PF01509
(TruB_N)
PF16198
(TruB_C_2) 		4 LEU A 253
MET A 252
VAL A 234
ASN A 269
 None
 1.43A 5b8iB-2ab4A:
undetectable		 5b8iB-2ab4A:
19.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2aq0 DNA REPAIR
ENDONUCLEASE XPF

(Homo sapiens) 		no annotation 4 LEU A  20
MET A  23
VAL A  26
ASN A  27
 None
 1.25A 5b8iB-2aq0A:
undetectable		 5b8iB-2aq0A:
20.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2aq0 DNA REPAIR
ENDONUCLEASE XPF

(Homo sapiens) 		no annotation 4 LEU A  20
MET A  23
VAL A  26
ASN A  61
 None
 1.24A 5b8iB-2aq0A:
undetectable		 5b8iB-2aq0A:
20.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hc5 HYPOTHETICAL PROTEIN
YVYC

(Bacillus
subtilis) 		PF03646
(FlaG) 		4 LEU A  40
MET A  43
VAL A  44
ASN A  48
 None
 1.39A 5b8iB-2hc5A:
0.5		 5b8iB-2hc5A:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i4s GENERAL SECRETION
PATHWAY PROTEIN C

(Vibrio cholerae) 		no annotation 4 LEU A 269
MET A 275
VAL A 274
ASN A 273
 None
 1.41A 5b8iB-2i4sA:
undetectable		 5b8iB-2i4sA:
23.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i6v GENERAL SECRETION
PATHWAY PROTEIN C

(Vibrio cholerae) 		no annotation 4 LEU A 267
MET A 275
VAL A 274
ASN A 273
 None
 1.39A 5b8iB-2i6vA:
undetectable		 5b8iB-2i6vA:
23.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jfw GLUTAMATE RACEMASE

(Enterococcus
faecium) 		PF01177
(Asp_Glu_race) 		4 LEU A 173
MET A 202
VAL A 201
ASN A 200
 None
 1.28A 5b8iB-2jfwA:
undetectable		 5b8iB-2jfwA:
20.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2kbe ATP-DEPENDENT RNA
HELICASE DBP5

(Saccharomyces
cerevisiae) 		PF00270
(DEAD) 		4 LEU A 153
MET A 152
VAL A 156
ASN A 157
 None
 1.27A 5b8iB-2kbeA:
0.0		 5b8iB-2kbeA:
25.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nrj HBL B PROTEIN

(Bacillus cereus) 		PF05791
(Bacillus_HBL) 		4 LEU A  31
MET A 206
VAL A 205
ASN A 204
 None
 1.41A 5b8iB-2nrjA:
0.4		 5b8iB-2nrjA:
19.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ogx MOLYBDENUM STORAGE
PROTEIN SUBUNIT
ALPHA

(Azotobacter
vinelandii) 		PF00696
(AA_kinase) 		4 LEU A  61
MET A  51
VAL A  50
ASN A 191
 None
None
None
ATP  A 281 (-2.8A)
 0.88A 5b8iB-2ogxA:
undetectable		 5b8iB-2ogxA:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wau ERYTHROCYTE MEMBRANE
PROTEIN 1 (PFEMP1)

(Plasmodium
falciparum) 		PF05424
(Duffy_binding) 		4 LEU A2355
MET A2441
VAL A2356
ASN A2363
 None
 1.33A 5b8iB-2wauA:
undetectable		 5b8iB-2wauA:
21.05
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ll8 CALCINEURIN SUBUNIT
B TYPE 1

(Homo sapiens) 		PF13499
(EF-hand_7) 		4 LEU B 115
MET B 118
VAL B 119
ASN B 122
 None
 0.37A 5b8iB-3ll8B:
22.4		 5b8iB-3ll8B:
63.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mcz O-METHYLTRANSFERASE

(Burkholderia
thailandensis) 		PF00891
(Methyltransf_2)
PF16864
(Dimerisation2) 		4 LEU A 302
MET A 305
VAL A 306
ASN A 121
 None
 1.21A 5b8iB-3mczA:
2.0		 5b8iB-3mczA:
17.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mqm PROBABLE
HISTONE-LYSINE
N-METHYLTRANSFERASE
ASH1L

(Homo sapiens) 		PF00439
(Bromodomain) 		4 LEU A2488
MET A2510
VAL A2513
ASN A2516
 None
 1.50A 5b8iB-3mqmA:
undetectable		 5b8iB-3mqmA:
22.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mxu GLYCINE CLEAVAGE
SYSTEM H PROTEIN

(Bartonella
henselae) 		PF01597
(GCV_H) 		4 LEU A  47
MET A 100
VAL A  73
ASN A  43
 None
 1.15A 5b8iB-3mxuA:
undetectable		 5b8iB-3mxuA:
21.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p3l CYTOCHROME P450

(Streptomyces
thioluteus) 		PF00067
(p450) 		4 LEU A  71
MET A  74
VAL A  75
ASN A 181
 None
 0.99A 5b8iB-3p3lA:
0.3		 5b8iB-3p3lA:
19.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v0a NTNH

(Clostridium
botulinum) 		PF01742
(Peptidase_M27)
PF07953
(Toxin_R_bind_N)
PF08470
(NTNH_C) 		4 LEU B 516
MET B 540
VAL B 539
ASN B 568
 None
 1.37A 5b8iB-3v0aB:
0.2		 5b8iB-3v0aB:
9.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4avc LYSINE
ACETYLTRANSFERASE

(Mycobacterium
tuberculosis) 		PF00027
(cNMP_binding)
PF13302
(Acetyltransf_3) 		4 LEU A 313
MET A 317
VAL A 318
ASN A 322
 None
 1.26A 5b8iB-4avcA:
undetectable		 5b8iB-4avcA:
19.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ci0 F420-REDUCING
HYDROGENASE, SUBUNIT
ALPHA

(Methanothermobacter
marburgensis) 		PF00374
(NiFeSe_Hases) 		4 LEU A 291
MET A 287
VAL A 103
ASN A 104
 None
 1.27A 5b8iB-4ci0A:
0.2		 5b8iB-4ci0A:
19.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4duu PLASMINOGEN

(Homo sapiens) 		PF00024
(PAN_1)
PF00051
(Kringle)
PF00089
(Trypsin) 		4 LEU A 649
MET A 788
VAL A 787
ASN A 790
 None
 1.43A 5b8iB-4duuA:
undetectable		 5b8iB-4duuA:
11.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4e1o HISTIDINE
DECARBOXYLASE

(Homo sapiens) 		PF00282
(Pyridoxal_deC) 		4 LEU A 362
MET A 120
VAL A 119
ASN A 118
 None
 1.30A 5b8iB-4e1oA:
undetectable		 5b8iB-4e1oA:
15.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f6t MOLYBDENUM STORAGE
PROTEIN SUBUNIT
ALPHA

(Azotobacter
vinelandii) 		PF00696
(AA_kinase) 		4 LEU A  61
MET A  51
VAL A  50
ASN A 191
 None
None
None
ATP  A 301 (-2.8A)
 1.09A 5b8iB-4f6tA:
undetectable		 5b8iB-4f6tA:
19.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4il1 CALMODULIN,
CALCINEURIN SUBUNIT
B TYPE 1,
SERINE/THREONINE-PRO
TEIN PHOSPHATASE 2B
CATALYTIC SUBUNIT
ALPHA ISOFORM

(Rattus
norvegicus) 		PF00149
(Metallophos)
PF13499
(EF-hand_7) 		4 LEU A 273
MET A 276
VAL A 277
ASN A 280
 None
 0.55A 5b8iB-4il1A:
18.5		 5b8iB-4il1A:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k08 METHYL-ACCEPTING
CHEMOTAXIS SENSORY
TRANSDUCER

(Anaeromyxobacter
dehalogenans) 		PF17200
(sCache_2) 		4 LEU A  84
MET A 106
VAL A  97
ASN A  98
 None
 1.41A 5b8iB-4k08A:
undetectable		 5b8iB-4k08A:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xb6 ALPHA-D-RIBOSE
1-METHYLPHOSPHONATE
5-TRIPHOSPHATE
SYNTHASE SUBUNIT
PHNI

(Escherichia
coli) 		PF05861
(PhnI) 		4 LEU C  78
MET C  49
VAL C  48
ASN C  71
 None
 1.28A 5b8iB-4xb6C:
undetectable		 5b8iB-4xb6C:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zxo GLYCOSYL HYDROLASE
FAMILY 26

(Bacteroides
ovatus) 		PF02156
(Glyco_hydro_26) 		4 LEU A 209
MET A 148
VAL A 147
ASN A 153
 None
 1.06A 5b8iB-4zxoA:
undetectable		 5b8iB-4zxoA:
18.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5aee ALPHA-GLUCOSIDASE
YIHQ

(Escherichia
coli) 		PF01055
(Glyco_hydro_31) 		4 LEU A 609
MET A 587
VAL A 586
ASN A 579
 None
 1.08A 5b8iB-5aeeA:
undetectable		 5b8iB-5aeeA:
12.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cw8 HTH-TYPE
TRANSCRIPTIONAL
REPRESSOR KSTR

(Mycobacterium
tuberculosis) 		PF00440
(TetR_N) 		4 LEU A  93
MET A  96
VAL A  97
ASN A 101
 None
 1.28A 5b8iB-5cw8A:
undetectable		 5b8iB-5cw8A:
23.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dmy BETA-GALACTOSIDASE

(Bifidobacterium
bifidum) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		4 LEU A 349
MET A 352
VAL A 354
ASN A 355
 None
 1.24A 5b8iB-5dmyA:
undetectable		 5b8iB-5dmyA:
10.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5duy GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 4 LEU A  30
MET A  78
VAL A  79
ASN A  27
 None
None
None
GOL  A 202 (-3.5A)
 1.48A 5b8iB-5duyA:
undetectable		 5b8iB-5duyA:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f8y GALNAC/GAL-SPECIFIC
LECTIN

(Crenomytilus
grayanus) 		no annotation 4 LEU A  30
MET A  78
VAL A  79
ASN A  27
 None
None
None
X6X  A 201 ( 3.5A)
 1.48A 5b8iB-5f8yA:
undetectable		 5b8iB-5f8yA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5thm ESTERASE-6

(Drosophila
melanogaster) 		PF00135
(COesterase) 		4 LEU A 132
MET A 125
VAL A 124
ASN A 123
 None
MLY  A  91 ( 3.9A)
None
None
 1.15A 5b8iB-5thmA:
undetectable		 5b8iB-5thmA:
15.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uao TRYPTOPHANE-5-HALOGE
NASE

(Microbispora
sp. ATCC
PTA-5024) 		PF04820
(Trp_halogenase) 		4 LEU A 239
MET A 342
VAL A 341
ASN A 340
 None
 1.46A 5b8iB-5uaoA:
undetectable		 5b8iB-5uaoA:
15.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ue8 PROTEIN UNC-13
HOMOLOG A

(Rattus
norvegicus) 		PF00130
(C1_1)
PF00168
(C2)
PF06292
(DUF1041)
PF10540
(Membr_traf_MHD) 		4 LEU A1336
MET A1332
VAL A1360
ASN A1359
 None
 1.47A 5b8iB-5ue8A:
undetectable		 5b8iB-5ue8A:
13.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ul4 OXSB PROTEIN

(Bacillus
megaterium) 		PF02310
(B12-binding) 		4 LEU A 644
MET A 690
VAL A 689
ASN A 688
 None
 1.39A 5b8iB-5ul4A:
1.1		 5b8iB-5ul4A:
14.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xyi UNCHARACTERIZED
PROTEIN

(Trichomonas
vaginalis) 		PF03297
(Ribosomal_S25) 		4 LEU Z  67
MET Z  34
VAL Z  38
ASN Z  41
 None
 1.36A 5b8iB-5xyiZ:
undetectable		 5b8iB-5xyiZ:
16.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6a91 -

(-) 		no annotation 4 LEU A 736
MET A 645
VAL A 644
ASN A 643
 None
 1.01A 5b8iB-6a91A:
1.5		 5b8iB-6a91A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ek6 LYSINE-SPECIFIC
DEMETHYLASE
5B,LYSINE-SPECIFIC
DEMETHYLASE 5B

(Homo sapiens) 		no annotation 4 LEU A 561
MET A 534
VAL A 533
ASN A 532
 None
 1.27A 5b8iB-6ek6A:
undetectable		 5b8iB-6ek6A:
17.92